Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48360 377 / 2e-130 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT5G63160 373 / 1e-128 BT1 BTB and TAZ domain protein 1 (.1) AT5G67480 236 / 5e-75 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT1G05690 234 / 4e-74 BT3 BTB and TAZ domain protein 3 (.1) AT4G37610 230 / 7e-73 BT5 BTB and TAZ domain protein 5 (.1) AT3G56230 60 / 6e-10 BTB/POZ domain-containing protein (.1) AT1G79000 57 / 9e-09 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT5G19000 54 / 9e-08 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT1G16710 54 / 1e-07 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 52 / 4e-07 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018087 [exp] 619 / 0 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 504 / 0 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10019299 [exp] 273 / 3e-89 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10033038 [exp] 259 / 2e-86 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10011523 [exp] 261 / 3e-84 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10025196 [exp] 259 / 6e-84 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10034780 [exp] 61 / 9e-10 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 59 / 4e-09 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033319 [exp] 57 / 1e-08 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087700 [exp] 470 / 6e-167 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 468 / 4e-166 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.007G140400 [exp] 282 / 2e-92 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.017G009700 [exp] 280 / 1e-91 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G055100 [exp] 242 / 6e-77 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.007G003400 [exp] 58 / 6e-09 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.014G000500 [exp] 58 / 6e-09 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.004G104201 [exp] 56 / 4e-08 AT1G79000 860 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.005G183600 [exp] 53 / 1e-07 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 52 / 2e-07 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02135 [flax] [poplar] zf-TAZ TAZ zinc finger CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10042082 pacid=23153856 polypeptide=Lus10042082 locus=Lus10042082.g ID=Lus10042082.BGIv1.0 annot-version=v1.0 ATGGCGGAACAACCTCACTGCGCATCACCACCACCGCCACCCACATCTACCAACGCCCATTTCCAAAAACTCGCCGGAGACGATAACTCTTCCCCTGAAT CGCCTCCGTCCGACGTCCAGATCCTCACCTCCGGCGGCCTCCGTATACCAGCGCACGCCGCGGTTCTGGCCATGGCGTCGCCGGTTCTGGGTAATATCAT TGACAATCCGCCGAAGCACCGGAGCTCCGAGCGGGTCATTCGGATCCTAGGCGTCCCTTGCCCCGCCGTCACCGTCTTCATCCGATTCCTCTACTCGTCA CGGTGCACAGAAGCTGATATGAAAAAGTATGGCATCCATCTGCTGACATTGTCACACGTCTACTTGATTCCTCAGCTGAAGAAGCTAAGCACCATGGCTG TGATCAAGAACTTGAGCGTTAATAATGTAGTGGACGTCCTCCAATTGTCAAGACTCTGCGATGCGCCTGATCTTTACCTCACGTGCGTGAAGTTAGTATC CAAGAACTTCAAAGCCGTGGAGAACACAGAAGGCTGGCAGTTCATCCAAGACCACGATCCCTGGCTGGAACTCGAGATCCTTCAGTTCATCGATGAATCC GAATTGAGGAAGAAGAGAAGTAAAAGGCAGAAGGAAGGGCGGAGGTTATACATGGAGCTAGGCGAGGCGATGGATTGCTTGGAACACATATGTACAGAAG GGTGTACAAGCGTTGGACCTTATGATGCTGAGCCTAATAAAAGGAAAGGGAAACCTTGCAGCAAGTTCTCCACTTGTCAAGGCGTCCAGCTTTTGATCAG GCACTTTGCTACCTGCAAGAAGCGGGTAAATGGAGGGTGTTCCCGTTGTAAAAGGATGTGGCAGCTCTTGAGACTTCACGCTTCCATCTGTGATCAACAC GATTCTTGCAAAGTCCCTCTTTGCAGGCAATTCAAATTGAAAATGCAGCAAGAGAAGAAGGGCGGTGGGGACACTTTGTGGAAGCTGCTAGTGCGCAAGG TAGTGTCTGCCAGAGTAATGGCTACTATATCCCTTGCCAAGAAGAAGCGAGAAGAGGAATCATAG
AA sequence Show only first row Show all	>Lus10042082 pacid=23153856 polypeptide=Lus10042082 locus=Lus10042082.g ID=Lus10042082.BGIv1.0 annot-version=v1.0 MAEQPHCASPPPPPTSTNAHFQKLAGDDNSSPESPPSDVQILTSGGLRIPAHAAVLAMASPVLGNIIDNPPKHRSSERVIRILGVPCPAVTVFIRFLYSS RCTEADMKKYGIHLLTLSHVYLIPQLKKLSTMAVIKNLSVNNVVDVLQLSRLCDAPDLYLTCVKLVSKNFKAVENTEGWQFIQDHDPWLELEILQFIDES ELRKKRSKRQKEGRRLYMELGEAMDCLEHICTEGCTSVGPYDAEPNKRKGKPCSKFSTCQGVQLLIRHFATCKKRVNGGCSRCKRMWQLLRLHASICDQH DSCKVPLCRQFKLKMQQEKKGGGDTLWKLLVRKVVSARVMATISLAKKKREEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10042082 [exp]	0	1
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10019340 [exp]	3.2	0.8024
AT5G28830			calcium-binding EF hand family...		Lus10009175 [exp]	3.5	0.7983
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	8.5	0.8432
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	9.8	0.8333
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	13.3	0.8365
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	15.6	0.7991
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	15.9	0.7820
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	17.1	0.8275
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	20.0	0.8118
AT1G77480			Eukaryotic aspartyl protease f...		Lus10018146 [exp]	23.1	0.8090

Compare expression of checked genes

Lus10042082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.