Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60780 779 / 0 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 753 / 0 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 366 / 9e-124 Clathrin adaptor complexes medium subunit family protein (.1.2) AT4G24550 260 / 2e-82 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G56590 168 / 2e-47 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT4G35410 42 / 0.0003 Clathrin adaptor complex small chain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004626 [exp] 781 / 0 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 767 / 0 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 705 / 0 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10000107 [exp] 639 / 0 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 342 / 2e-114 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10030961 [exp] 327 / 2e-108 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10024548 [exp] 241 / 8e-75 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 234 / 5e-72 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10031432 [exp] 174 / 1e-49 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044700 [exp] 781 / 0 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 778 / 0 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 354 / 4e-119 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 353 / 1e-118 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 250 / 1e-78 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.013G006400 [exp] 172 / 5e-49 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.005G010600 [exp] 171 / 2e-48 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105050 [exp] 72 / 1e-14 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.012G052000 [exp] 43 / 0.0001 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 40 / 0.0008 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10042083 pacid=23153903 polypeptide=Lus10042083 locus=Lus10042083.g ID=Lus10042083.BGIv1.0 annot-version=v1.0 ATGGCAGGCGCCGCCTCGGCGCTCTTCCTTCTCGACATCAAAGGCCGTATCCTCATCTGGCGCGATTACCGCGGCCACGTCACCGCCTCTCAGGCTGAGC GCTTCTTTTCCAAGCTCCTCGACAAACAGGCTGATCTACAGTCTCAGGATCCTGTGGTTTACGAGGATGGAATTACTTACATGTTCATACAGCACAACAA CATTTACTTGCTCGTCGCATCCAAACAGAACTGCAATGCTGCCAGCCTTCTTCTCTTCCTTCATCGCGTAGTTCAAGTTTTCAAGCATTACTTTGAGGAG CTAGAGGAGGAATCTCTCAGAGACAATTTTGTCGTTGTGTATGAGCTACTTGATGAAATCATGGACTTTGGGTTTCCACAATTTACTGAGGCGAAGATTC TGAGCGAGTTCATCAAGACGGATGCATACAGGATGGAAGTTGCACAGAGGCCTCCTATGGCTGTGACTAACGCTGTTTCTTGGCGTAGTGAAGGGATAAA GTACAAAAAGAACGAAGTGTTCCTTGATGTGGTGGAAAGTGTGAACATTCTTGTTAACAGCAATGGGCAAATTATCCGGTCGGATGTGGTTGGGGCGTTA AAGATGAGAACATACTTGAGTGGCATGCCTGAGTGCAAGCTTGGCCTAAATGACAGATTGCTAATGGAGTCTCAAGGTCGATCAAGCAAAGCAAAAGCCA TTGATCTTGATGATATCAAATTCCATCAATGTGTTCGTTTGGCTCGATTCGATAACGATAGGACGATATCTTTCATACCTCCAGATGGCTCTTTTGACCT AATGACGTACAGGCTCGCCACCCAGGTGAGACCTCTTATTTGGGTAGAAGCTGAAGTCGAGAGGCATTCCAGAAGCCGAATCGAATTAATGGTGAAAGCT CGCAGCCAATACAAAGAACGAAGCACTGCAACAAACGTAGAGATTGTATTGCCGGTTCCATCTGACGCTACCAATCCCAACGTCAGGACATCAATGGGTT CCGCTTTGTACGCTCCGGAGAACGATGCACTCGTCTGGAAGATCAGATCATTCCCTGGCAGTAAGGAATACTTGCTTCGGGCAGAGTTCGGACTTCCCAG CGTAAGAGGCGAAGAGGAAGTGGTGGAGAGGAAAGCACCGGTGAGAGTGAAGTTCGAGATTCCATATTTCACCGTCTCGGGGATTCAGGTGCGTTATCTG AAGGTGATAGAGAAAGCAGGGTATCAGGCACTTCCATGGGTGAGATATATAACAATGGCGGGTGAATATGAATTGAGAATGACTTACAACAATTAA
AA sequence Show only first row Show all	>Lus10042083 pacid=23153903 polypeptide=Lus10042083 locus=Lus10042083.g ID=Lus10042083.BGIv1.0 annot-version=v1.0 MAGAASALFLLDIKGRILIWRDYRGHVTASQAERFFSKLLDKQADLQSQDPVVYEDGITYMFIQHNNIYLLVASKQNCNAASLLLFLHRVVQVFKHYFEE LEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVAQRPPMAVTNAVSWRSEGIKYKKNEVFLDVVESVNILVNSNGQIIRSDVVGAL KMRTYLSGMPECKLGLNDRLLMESQGRSSKAKAIDLDDIKFHQCVRLARFDNDRTISFIPPDGSFDLMTYRLATQVRPLIWVEAEVERHSRSRIELMVKA RSQYKERSTATNVEIVLPVPSDATNPNVRTSMGSALYAPENDALVWKIRSFPGSKEYLLRAEFGLPSVRGEEEVVERKAPVRVKFEIPYFTVSGIQVRYL KVIEKAGYQALPWVRYITMAGEYELRMTYNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10042083 [exp]	0	1

Compare expression of checked genes

Lus10042083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.