Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24670 189 / 9e-58 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G23320 169 / 2e-50 TAR1 tryptophan aminotransferase related 1 (.1) AT1G70560 160 / 6e-47 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G34040 146 / 2e-41 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34060 142 / 8e-40 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018088 [exp] 299 / 1e-96 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10039944 [exp] 249 / 7e-81 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 241 / 5e-79 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10006199 [exp] 169 / 2e-50 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10036846 [exp] 162 / 1e-47 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10028695 [exp] 140 / 5e-39 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 138 / 5e-38 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083300 [exp] 202 / 9e-63 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.T125108 [exp] 202 / 1e-62 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.010G044500 [exp] 164 / 9e-49 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 164 / 1e-48 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.002G063800 [exp] 139 / 2e-38 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G064000 [exp] 135 / 4e-37 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Lus10042084 pacid=23154020 polypeptide=Lus10042084 locus=Lus10042084.g ID=Lus10042084.BGIv1.0 annot-version=v1.0 ATGGGCCGGCGACGCCTCCAAATTCCAAGCGCACGGGCCCTTCGTGGAATTCGTAACTTCGCCCAACAACCCAGACGGGTTTACTCGACACCCGGTCGTG AACCGAACGGAGGGTTTCTGGTTCACGATCTCGCTTACTACGGGCCGCAATACACCCCCGTGACTTCCCCTTCCGATCACGACATCACCCTTTTCACCGT CTCCAAATCCACCGGCCACGCTGGCATCCGGATCGGATGGGCGCTGGTGAAGGATCCTGAGGTGGCGAGGAAAATGACGAAATTCATAGAGCTGAGCAGC CTGGGGGTGTCCAAGGACTCGCAGCTGAGAGCAACCAAGATAATGGAGGTCGTTTCGGCGGATGCTGAGGAGGAATCCAAGCGGGTCTCATCGCTGTTCG AGTTCGGGTTGAAGAACATGAAACGGCGGTGGAAGATGTTGAGAGCGGCGGTGAAAAAGAGCGGAGGAATGTTCAGCTTGCCGGATTACAGATCGGAGTT CTGCAGTTTCAACGGCCAGTCCATGTCAAACCAACCCGCGTTTGCGTGGGTGAAGTGCGAGGGAGGAGACGTTGAAGACTGTGAAGAGGCGTTCAAGAAG AATAAGATTGAGTCACTTTTAATATCTACATGGGATAATCATGCATTGTGGTTGATAAATCAGTACTACGTGTATTGTTTACTTTTAGTAAAATTTGGTG ACTTACTGGTTAATTGA
AA sequence Show only first row Show all	>Lus10042084 pacid=23154020 polypeptide=Lus10042084 locus=Lus10042084.g ID=Lus10042084.BGIv1.0 annot-version=v1.0 MGRRRLQIPSARALRGIRNFAQQPRRVYSTPGREPNGGFLVHDLAYYGPQYTPVTSPSDHDITLFTVSKSTGHAGIRIGWALVKDPEVARKMTKFIELSS LGVSKDSQLRATKIMEVVSADAEEESKRVSSLFEFGLKNMKRRWKMLRAAVKKSGGMFSLPDYRSEFCSFNGQSMSNQPAFAWVKCEGGDVEDCEEAFKK NKIESLLISTWDNHALWLINQYYVYCLLLVKFGDLLVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10042084 [exp]	0	1
AT1G17970			RING/U-box superfamily protein...		Lus10021722 [exp]	38.2	0.6656
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	38.2	0.6852
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041303 [exp]	67.2	0.6498
AT5G41620			unknown protein		Lus10028746 [exp]	180.7	0.6165
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10036314 [exp]	181.5	0.6166
					Lus10019251 [exp]	186.0	0.5855

Compare expression of checked genes

Lus10042084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.