Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54170 326 / 4e-104 ATFIP37 FKBP12 interacting protein 37 (.1) AT5G14540 87 / 2e-17 Protein of unknown function (DUF1421) (.1) AT3G01560 82 / 4e-16 Protein of unknown function (DUF1421) (.1) AT4G28300 53 / 6e-07 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018089 [exp] 715 / 0 AT5G14540 91 / 4e-19 Protein of unknown function (DUF1421) (.1) Lus10018090 [exp] 551 / 0 AT3G54170 390 / 6e-136 FKBP12 interacting protein 37 (.1) Lus10039948 [exp] 398 / 3e-131 AT3G54170 414 / 4e-145 FKBP12 interacting protein 37 (.1) Lus10027681 [exp] 397 / 5e-131 AT3G54170 402 / 2e-140 FKBP12 interacting protein 37 (.1) Lus10032138 [exp] 82 / 1e-15 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197600 [exp] 403 / 2e-133 AT3G54170 359 / 5e-124 FKBP12 interacting protein 37 (.1) Potri.T125008 [exp] 186 / 1e-50 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 169 / 1e-44 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.001G348500 [exp] 81 / 2e-15 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10042086 pacid=23153568 polypeptide=Lus10042086 locus=Lus10042086.g ID=Lus10042086.BGIv1.0 annot-version=v1.0 ATGGCTTCTCGCAACCATCTCGACGACGTGAGTCCTCTGCTCCATCCTCGTCTTTTCAGGTCAATCTGTAGGGTTTTAATTTCGTCGAACTTGTCGATTT TGTGTAGGATGATGGCTTCGGCGGTGATTTCAATGGAAGTCACAACGACAACCGTTCAGCGTCGTCCTGTTGTTAACTGTCGTTTTTGTCCTTGCTCTGT TTCGGGATCAGGTAATAAGAGAAGCTTTGCGGATATTGAGGACGATGAAGATGATATATTTAGCTCCAAGAAGGGGAGTTCTAAGGTTGAAGAAACAGCC ATGATTCTGTCTCTTCGAGAGAGCCTTGACAATTGCAAAAATGACCTTGCTTCATGCCAATCAAAGCTTGAAGCAATGAAGTCGGAGATTGGGAAGTGGC ATTCTACATTTGATAATATCCCCGGCGTACCCTCTGGAGCATCTCCTGAACCTAAACTAGTCATCAGTTATCTTCAAACTCTGAAATCTTCTGAGGAGTC ATTGAAGGAACAGCTTGAGAAAGCAAAGAAAAAGGAAGCGGCCTTCATTGTAACATTTGCCAAGCGAGAACAGGAGATTGCAGAATTAAAATCTGCTGTC CGGGACCTGAGAGCTCAGCTAAAGCCACCATCAATGCAGGCAAGGAGATTGCTACTTGATCCAGCAATTCATGAGGAATTTACTCGCTTGAAGACTTTGA TTGAAGAGAAGGACAAAAAGGTGAAGGAACTACAGGATAACATTGCTGCAATGAGTTTTACTCCTCAAAGCAAGATGGGAAAGATGCTGATGGCAAAGTG CAGGACTCTTCAAGACGAAAATGATGAGATTGGCTCTGCAGCTGCTGAAGGACCTATCCATGAGTTGGCACTGAAGCTTGCTTTGCAGAAATCTCAGAAT GTAGAGCTCCGAAATCATTATGGAGATCTGTATGATCACATGGAGGGCCTATTGGACGATGTAGAGAAATCAAATGAAATGGTGCTTGTATTGCAACAGA AACTTGGGGAAAAGGATGAGGAGATCAACCAGCTGAAGCAGATGATTGAGCTGCAAGAGAAGAACACAGTAGAAGCAGAAAAAGCCGAAGCAGATTATCA ACCCAAGAACCTAGTCCCAGACAACAATGGAGGAGTTAGCAATGAAGTGGTGACTCCAAAACAAGAGATTGAGGCTACTGACAGCGAAAGCGTGGAGGGA GGAACTCGGTCAAATTGCAGAAAATTCGAGTATTTTTCTCTCCATCGTCTAAGTTGCCAAATGAAGCCAGTCACGCGACTTCCTGATTCCCCCACACGCA ATTTTTTCTCCGACGACGACGATGATGATGAAGACGATACTGGACTCTTCCACGGTGGACCTCCTCGCAGCGATTACTACGGAGATTACAGCTTCGAATT CCATCCAACTCCTACTTCTCAGGTGGTGATAACTTCTCTTTTCCCCAGCCATCTATTCTATCGTATGCTTTTGCTGTTTGGCAAATCATCCTCTCCATTA GTTGTTTGCTTGCTTACTTTGGTGATGCAACTTCTTCAGGTCTTCGATTCTGTTGACTTTAGTGCTGGATTGAGTGCTGAGATCAACCGGAGGATGAATG CGCACGCGGATGTTTTGCTTCGATCAGTAGATCGTCTCAGCTCGCACGTTTCTCGGATGGAAAGCAGAACGCGGCAATTAGAAGATGCGTTTGATGATTT GAAAGAAGCCGTCCGGTTTTACCAGGGGAAGGCCGATGGACAGCTTCAGCAGCTTCAGAATAGTCTAACTGAGGTTCAGGACGGCGTCAAAGACTTGAGA GATAAGCAGGACATAGCAATGACACAGCTCCACCTTGCAGAGATTCACAAATCAGTGGACGATTCTCATTCAGGAAAGAAAACCAGCACCATCCAAACTG GTTTAAGTGATCCAACTCCTTCATCTGTCAGCCAGCAGGTCAATCAACCTCCTCCTAGCTTCACAACCATATATCATCATGGCCCAACTGACCATGTCGC AGCTTCAGCTCAGCCTCCTTTGCATCAACCAGCAAACTCCAATATAATCCCCCCAGCAGTACCCCAGTATACAGTCCAGTCACCCTACGATGCCTCTCTC CCAAAGCAACAATGTTTCCAACCACTGCCCAATTTCCCACCAGAAACTGCACATCAGCCAGTTCATGTTCCTCAAATTGAGCAACTGCAGCCGTCATATT ATCCTCAGCAGACCCCTCTCACCATGGTTGATCCTAGAGTCAATTACCAGTCGAGCCAGAATCCTGGACTAGTTCCTTCGGCCGCATTATCTGGGAGGTC TTTCCATCATCAGCAACAGCCGAATCAAGGCACCGGCCAGCCAGCTCCCTCATACTACAGTTATGGTGGCTCCTCGTTACCTAGTAGTGGTAGACCAACT ACAAAGTCACAAGCATATCTAGTGACAGCAAACGAGAGGGAACGCTCACGGTCACGACTCCCAACTGCTCAGTTGCTTCCACGTGCCATCCCGACCGCCT CTGCCGTGGAGGAAACTTTGCCAGCAGCAACATCTAGGGGAGACATAAGCAGGGTGCCGGTGGATGATGTGGTTGACAAAGTAGTAGCTATGGGGTTCCG GAGAGACTTGGTCCGAGCAACAGTGAAAGTCCTTACGGAGAATGGCCAGGCAGTGGATATGAATGTGGTGCTGGATAAGCTGATGAACAGTAAGTAA
AA sequence Show only first row Show all	>Lus10042086 pacid=23153568 polypeptide=Lus10042086 locus=Lus10042086.g ID=Lus10042086.BGIv1.0 annot-version=v1.0 MASRNHLDDVSPLLHPRLFRSICRVLISSNLSILCRMMASAVISMEVTTTTVQRRPVVNCRFCPCSVSGSGNKRSFADIEDDEDDIFSSKKGSSKVEETA MILSLRESLDNCKNDLASCQSKLEAMKSEIGKWHSTFDNIPGVPSGASPEPKLVISYLQTLKSSEESLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAV RDLRAQLKPPSMQARRLLLDPAIHEEFTRLKTLIEEKDKKVKELQDNIAAMSFTPQSKMGKMLMAKCRTLQDENDEIGSAAAEGPIHELALKLALQKSQN VELRNHYGDLYDHMEGLLDDVEKSNEMVLVLQQKLGEKDEEINQLKQMIELQEKNTVEAEKAEADYQPKNLVPDNNGGVSNEVVTPKQEIEATDSESVEG GTRSNCRKFEYFSLHRLSCQMKPVTRLPDSPTRNFFSDDDDDDEDDTGLFHGGPPRSDYYGDYSFEFHPTPTSQVVITSLFPSHLFYRMLLLFGKSSSPL VVCLLTLVMQLLQVFDSVDFSAGLSAEINRRMNAHADVLLRSVDRLSSHVSRMESRTRQLEDAFDDLKEAVRFYQGKADGQLQQLQNSLTEVQDGVKDLR DKQDIAMTQLHLAEIHKSVDDSHSGKKTSTIQTGLSDPTPSSVSQQVNQPPPSFTTIYHHGPTDHVAASAQPPLHQPANSNIIPPAVPQYTVQSPYDASL PKQQCFQPLPNFPPETAHQPVHVPQIEQLQPSYYPQQTPLTMVDPRVNYQSSQNPGLVPSAALSGRSFHHQQQPNQGTGQPAPSYYSYGGSSLPSSGRPT TKSQAYLVTANERERSRSRLPTAQLLPRAIPTASAVEETLPAATSRGDISRVPVDDVVDKVVAMGFRRDLVRATVKVLTENGQAVDMNVVLDKLMNSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10042086 [exp]	0	1
AT5G11680			unknown protein		Lus10027000 [exp]	3.9	0.8972
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	7.2	0.8955
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	7.4	0.8861
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	7.7	0.8928
AT2G42780			unknown protein		Lus10031380 [exp]	11.6	0.8731
AT1G70160			unknown protein		Lus10029209 [exp]	11.8	0.8893
AT4G13630			Protein of unknown function, D...		Lus10022791 [exp]	12.0	0.8699
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	14.2	0.8840
AT1G65020			unknown protein		Lus10024543 [exp]	17.0	0.8657
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	17.7	0.8687

Compare expression of checked genes

Lus10042086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.