Plant FIBer expression Database

Lus10042087 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23490 211 / 1e-70 CYN cyanase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018091
[exp]
276 / 5e-96 AT3G23490 243 / 2e-83 cyanase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G068200
[exp]
220 / 2e-74 AT3G23490 217 / 2e-73 cyanase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02560 Cyanate_lyase Cyanate lyase C-terminal domain
CL0123 HTH PF01381 HTH_3 Helix-turn-helix
Representative CDS sequence
>Lus10042087 pacid=23153627 polypeptide=Lus10042087 locus=Lus10042087.g ID=Lus10042087.BGIv1.0 annot-version=v1.0
ATGGAAGAAACGAAAGCGGCGATCTGCAGCCGGCTGCAGTCAGTGAGATGCAACTCCGGCAAGAGCTACACTGAGCTCGCGGAAGCGACGGGGCTCACCA
ATGTGTACGTCGCTCAGCTGCTGCGTCGACAGGCTCAACTGAAGGCCGATACTGCTCCGAAGCTTCAAGCTGCGTTGCCTGAGCTGTCTGATGAGCTCAT
TAACGAGATGATGAAGCCTCCGTTTAGGTCCTACAACCCCAATATGATCCAGGAACCCACTATTTACAGGTTAAATGAAGCTATTATGCACTTTGGTGAA
AGCATAAAGGAGATCGTCAATGAGGAATTCGGTGATGGCATCATGTCAGCCATAGATTTCTACTGCTCAGTGGACAAAGTGAAAGGTGTTGATGGAAAAG
ATCGTGTTGTGCTGACATTTGATGGCAAATATTTGCCTCATACCGAGCAGATCCAAGTTGCAGTGAAGTTAGCTGCCGGTAGCTGCTGGAGGTTCTCTTC
AGTTGCGCCATCAGTCTGTCTCCAGTTCTATCTGGACTGA
AA sequence
>Lus10042087 pacid=23153627 polypeptide=Lus10042087 locus=Lus10042087.g ID=Lus10042087.BGIv1.0 annot-version=v1.0
MEETKAAICSRLQSVRCNSGKSYTELAEATGLTNVYVAQLLRRQAQLKADTAPKLQAALPELSDELINEMMKPPFRSYNPNMIQEPTIYRLNEAIMHFGE
SIKEIVNEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVLTFDGKYLPHTEQIQVAVKLAAGSCWRFSSVAPSVCLQFYLD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G23490 CYN cyanase (.1) Lus10042087
[exp]
0 1
AT1G04290 Thioesterase superfamily prote... Lus10004288
[exp]
6.1 0.8402
Lus10003566
[exp]
8.5 0.8152
AT5G19960 RNA-binding (RRM/RBD/RNP motif... Lus10017757
[exp]
9.8 0.8320
AT2G04520 Nucleic acid-binding, OB-fold-... Lus10000920
[exp]
13.1 0.8349
AT2G42680 MBF1A, ATMBF1A ARABIDOPSIS THALIANA MULTIPROT... Lus10000056
[exp]
18.4 0.8312
AT1G26550 FKBP-like peptidyl-prolyl cis-... Lus10019084
[exp]
28.6 0.8072
AT5G14100 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRIN... Lus10032025
[exp]
30.6 0.8156
AT4G00530 unknown protein Lus10037854
[exp]
31.7 0.7977
AT4G35750 SEC14 cytosolic factor family ... Lus10021230
[exp]
35.4 0.7826
AT3G55920 Cyclophilin-like peptidyl-prol... Lus10030408
[exp]
35.7 0.8190

Lus10042087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.