Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48210 204 / 4e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018093 [exp] 483 / 2e-174 AT3G48210 238 / 3e-77 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124408 [exp] 280 / 3e-94 AT3G48210 236 / 1e-76 unknown protein Potri.015G080900 [exp] 277 / 5e-93 AT3G48210 255 / 7e-84 unknown protein Potri.012G088000 [exp] 269 / 2e-89 AT3G48210 222 / 6e-71 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08234 [flax] [poplar] Spindle_Spc25 Chromosome segregation protein Spc25
Representative CDS sequence Show only first row Show all	>Lus10042089 pacid=23153887 polypeptide=Lus10042089 locus=Lus10042089.g ID=Lus10042089.BGIv1.0 annot-version=v1.0 ATGGAGACGCTGCGCTTGATCTCTGAAGAGAAGATTCCTCGAGAGCTTGAGAGAATGGACTCGTTCACGGAGCATTGCGCCACTTCGTTGGATTCAATCA AGGTCAAAGCTGGAGACACGGCTCAGTGTCACGGGAAATTATGGAAGCTCAAGTCTACCTTGAGAGATGCTGAAGATGAATTTGTCAAAGTTTTGTCAGT GAAGTCGAGGAAAGAGGCTAGGCAGATGGCTCTTAAAGCCTCCATCAATGCTGTACGAAATCGGTCAGAAGAACTTGGAAGGAATTTGCAAATTCAAACA TCAAGAAGGGATGAGTGCGCTGGAATTATCTCTCAATTATCCCGTGGGAACCAGGACGATGAATGTAGAGGGGATACTCAAGAGGCATTGTCATGGTACA ATAGAGTTCTGGGGTTCCAAATTGCAGGAGGCCGTGGGGTTAAATTCACATTCGAAAACATCAATGTAAAAAATCCACCCAAAAAGTACTCCTTCACTAT TCGACATGAGAATGATACATACAGCTTATTGGCTTGTGATCCAGTGCGGAATGATATCAAGGAGCTGATCAACGAGCTGAATAGAACCAATGGCTTATTC AAGTTTGTCAGAACAATGAGGGAAAAGTTTCAAGAAGTTGCAGCGTCTGGATCTATGCATCAATCCACAAGTCTGCAACAAGAGTTGTCCACATTATCTG CATTTGCTCCAGCTATGTCAGCTTCGACTTACCAAAGTGAATCTCCAGCACCGAATAAGAATCATTCCGATAATGCCGAAAGACGCTTGGGCAGGAAAGG ACCATTGTCCCCCGAGTCTATACTCCGATCTCCTCGTTTTCGGAAGCCATTGAAACAGGTTAGGAAATAA
AA sequence Show only first row Show all	>Lus10042089 pacid=23153887 polypeptide=Lus10042089 locus=Lus10042089.g ID=Lus10042089.BGIv1.0 annot-version=v1.0 METLRLISEEKIPRELERMDSFTEHCATSLDSIKVKAGDTAQCHGKLWKLKSTLRDAEDEFVKVLSVKSRKEARQMALKASINAVRNRSEELGRNLQIQT SRRDECAGIISQLSRGNQDDECRGDTQEALSWYNRVLGFQIAGGRGVKFTFENINVKNPPKKYSFTIRHENDTYSLLACDPVRNDIKELINELNRTNGLF KFVRTMREKFQEVAASGSMHQSTSLQQELSTLSAFAPAMSASTYQSESPAPNKNHSDNAERRLGRKGPLSPESILRSPRFRKPLKQVRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48210			unknown protein		Lus10042089 [exp]	0	1
AT3G48210			unknown protein		Lus10018093 [exp]	1.4	0.8830
AT3G59110			Protein kinase superfamily pro...		Lus10006544 [exp]	1.4	0.8827
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	2.4	0.8773
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	4.0	0.8751
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	5.9	0.8706
					Lus10011118 [exp]	6.0	0.8531
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	6.5	0.8674
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	8.2	0.8452
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	8.5	0.8447
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	8.8	0.8529

Compare expression of checked genes

Lus10042089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.