Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56040 338 / 2e-106 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 324 / 4e-101 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 282 / 1e-85 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 279 / 1e-84 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 272 / 5e-82 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65700 254 / 6e-76 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 252 / 4e-75 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 239 / 2e-70 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 235 / 7e-69 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 233 / 5e-68 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018094 [exp] 425 / 1e-149 AT5G56040 251 / 2e-76 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10032954 [exp] 327 / 3e-102 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011756 [exp] 291 / 6e-89 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10018911 [exp] 286 / 6e-87 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 282 / 1e-85 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000509 [exp] 275 / 3e-83 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 273 / 2e-82 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023677 [exp] 270 / 4e-81 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011576 [exp] 240 / 2e-71 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080800 [exp] 504 / 8e-170 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 495 / 3e-166 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G164800 [exp] 335 / 3e-105 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 329 / 4e-103 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 304 / 2e-93 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 299 / 8e-92 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 286 / 3e-87 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G198000 [exp] 284 / 2e-86 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G070900 [exp] 283 / 5e-86 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 278 / 2e-84 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042090 pacid=23153785 polypeptide=Lus10042090 locus=Lus10042090.g ID=Lus10042090.BGIv1.0 annot-version=v1.0 ATGATTTGTTTTCCTCCTCCTCCTCTGCATCTTCTTCACTTCATCATCTTCTTCCTCCTTCCTCCTCCCAAGGCTCCTCAAATTTCTCCCACATCCCTTT TCTCGATATTTGCATCAATTAAGTTTTCAGCTCCAGTTCCAATGCCTATGGGCCCACCTTGGGAAGTTACCTTGTATCAGAAACTCGACCTGTCGATATC GGACGTGGCGAGATCGCTGACGTCAGCAAACATAATCGGCCGCGGCAGAACCGGAGTCGTCTACAGAGTCGCGCTTTCCTCAACCGGGTCAACAACTTTA GCGGTCAAGAAATTCAAGTCGTCCGATAAAGTCTCCTCCGCGGCGTTTTCGTCGGAGATCGCTACATTGTCCAGAATCCGGCACCGGAACATCGTGCGGC TGTTGGGATGGGGAGCGAACCTGAAGACCAAAGTCCTGTTCTACGACTACATGGTTAACGGAACCTTGGGAGCATTACTCCATGAAGGTGGCGCCTTGTT GGAATGGGAAACAAGATTCAAAATCGCCCTAGGAGTGGCCGAAGGATTATCCTACCTCCACCACGATTGCGTTCCGGCGATCCTCCACCGCGACGTGAAA TCACACAACATCCTCCTTGGGGATCGTTACGAGTCCTGCCTGGCCGATTTCGGCCTGGCCAGATTGGTGGAGGACGGTCAGGGATCATTCTCCGAGAATC CCCAATTGGCAGGATCATACGGCTACATGGCACCAGAGTATGCTTGTATGCTAAAAATAACGGAGAAGAGCGACGTGTACAGCTACGGAGTAGTGTTATT AGAGATCATAACGGGGAAGAAGCCTGTGGATCCATCGTTTCCAGAAGAGCAACACGTGATTCAATGGGTGAGAGAGCATCTAAAGAGCAAGAAGGACCCG GTGGAGATACTAGACCCGAAGTTGCAAGGTCATCCGGACACGCAAATACAGGAAATGCTTCAAGCATTGGGGATATCCTTGCTATGCACGAGCAACCGGG GCGAAGATAGGCCGACAATGAAGGATGTGGCGGCTTTGCTTAGGGAGATTCGACACGAGCCGATTGTTGGGTCCGATGCTCAGAAGCCCGGGAAAGCGGG AGAGAACTTGTCGACGAAAACGTCGTCGTCTGGCATCACTCCGTCGCAGATGATGATGCTACAAGCATCGTCGAACTGCTCGCTGGCAAATTACTCGTCC AGTTATGGTAACAGTAGGAGTTGA
AA sequence Show only first row Show all	>Lus10042090 pacid=23153785 polypeptide=Lus10042090 locus=Lus10042090.g ID=Lus10042090.BGIv1.0 annot-version=v1.0 MICFPPPPLHLLHFIIFFLLPPPKAPQISPTSLFSIFASIKFSAPVPMPMGPPWEVTLYQKLDLSISDVARSLTSANIIGRGRTGVVYRVALSSTGSTTL AVKKFKSSDKVSSAAFSSEIATLSRIRHRNIVRLLGWGANLKTKVLFYDYMVNGTLGALLHEGGALLEWETRFKIALGVAEGLSYLHHDCVPAILHRDVK SHNILLGDRYESCLADFGLARLVEDGQGSFSENPQLAGSYGYMAPEYACMLKITEKSDVYSYGVVLLEIITGKKPVDPSFPEEQHVIQWVREHLKSKKDP VEILDPKLQGHPDTQIQEMLQALGISLLCTSNRGEDRPTMKDVAALLREIRHEPIVGSDAQKPGKAGENLSTKTSSSGITPSQMMMLQASSNCSLANYSS SYGNSRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	0	1
					Lus10012740 [exp]	1.4	0.8752
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	3.5	0.8230
AT1G20870			HSP20-like chaperones superfam...		Lus10030721 [exp]	4.2	0.8129
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	4.6	0.8057
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	8.5	0.8042
AT3G06890			unknown protein		Lus10006514 [exp]	10.2	0.7722
AT1G71020			ARM repeat superfamily protein...		Lus10043471 [exp]	11.7	0.8282
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	12.2	0.8190
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	12.4	0.7818
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	12.4	0.7714

Compare expression of checked genes

Lus10042090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.