Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63080 164 / 3e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001249 [exp] 277 / 1e-93 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080400 [exp] 180 / 3e-53 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042091 pacid=23153869 polypeptide=Lus10042091 locus=Lus10042091.g ID=Lus10042091.BGIv1.0 annot-version=v1.0 ATGGGTTTGGAAATCCGAGGGGAGATAGACAAGGTAAACGGCAAAGATCTGAGCTACAATGAATTTGCGGATAACTATTTGGCGATGAATCGTCCCGTGC TGCTCACCGGACTCATGGAAAATTGGAGAGCTTGCAAAGATTGGGTCACCGCAGATGGCCGACCCAACTTGGAATTCTTCTCTACCCACTTCGCCAAATC ACGAGTTCAGGTTGCGGATTGCGGAACTAGGGAATTTACTGATCAAAAGAGAGTTGAGATGACCGTGGCGGGGGTCATTGATCACTGGGTTAACAAGGAT CGTCTTGTCGAGGGTTCCGGCGAGTCAGTGTTGTATTTGAAGGACTGGCATTTTGTAAAGGAAGATACCATATCAATAAACCATTACTGGTTCAATGGGC ATAACCTTTCTTGGGTGTTTAATCTTCTATTAAGAGACTACAAAGAGGCAAAAGAGTACATTGAAGACATCCGGGACATCTCTGATGACTTTGAAGGTCT CTGCCAGCGAAACCTTGCTGCCAACACAGGCATGAATTTTGTTGACTTCTTTGTTTTTCTGCTGCGGTTCTTCTTGGCAAACCTCGTCCAAGTCTTCCGT AAATCATCGGCATCAAGTCCATCCGAATTAACTCAACATTTCACTTTCAATTTGTCAACCATCCGGAGGATGGCGGTGAAGATGGAGCAATCAGTAGATG GCCTGGCGGGGTATCCCGGATTCGCAACAAACCTAAGGGAAACTTTGGACGATCTGGAGTTCCTTGAACTGTGTATTGATGTGGGCAAAACATACGGGAC GATACACGATCAGATGAGTAGCCGTTCGGGATCAGATGAGTAG
AA sequence Show only first row Show all	>Lus10042091 pacid=23153869 polypeptide=Lus10042091 locus=Lus10042091.g ID=Lus10042091.BGIv1.0 annot-version=v1.0 MGLEIRGEIDKVNGKDLSYNEFADNYLAMNRPVLLTGLMENWRACKDWVTADGRPNLEFFSTHFAKSRVQVADCGTREFTDQKRVEMTVAGVIDHWVNKD RLVEGSGESVLYLKDWHFVKEDTISINHYWFNGHNLSWVFNLLLRDYKEAKEYIEDIRDISDDFEGLCQRNLAANTGMNFVDFFVFLLRFFLANLVQVFR KSSASSPSELTQHFTFNLSTIRRMAVKMEQSVDGLAGYPGFATNLRETLDDLEFLELCIDVGKTYGTIHDQMSSRSGSDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10042091 [exp]	0	1
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	12.0	0.7319
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10004652 [exp]	23.0	0.7304
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10024151 [exp]	23.6	0.7210
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	25.8	0.6640
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10004370 [exp]	27.5	0.6747
					Lus10036765 [exp]	59.0	0.6862
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	61.1	0.6862
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	63.1	0.6862
					Lus10006395 [exp]	65.1	0.6862
AT2G16190			unknown protein		Lus10011284 [exp]	66.9	0.6862

Compare expression of checked genes

Lus10042091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.