Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24680 352 / 8e-100 MOS1 modifier of snc1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001246 [exp] 2522 / 0 AT4G24680 659 / 0.0 modifier of snc1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088500 [exp] 852 / 0 AT4G24680 532 / 2e-163 modifier of snc1 (.1) Potri.015G079800 [exp] 529 / 2e-161 AT4G24680 518 / 2e-158 modifier of snc1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042094 pacid=23153751 polypeptide=Lus10042094 locus=Lus10042094.g ID=Lus10042094.BGIv1.0 annot-version=v1.0 ATGACTGTTTTAGGGAAAGTGGCTGTACCAAAGCCAATTAATTTGCCCAGTCAGAGGTTGGAAAATCATGGCGTCGACCCAAATGTTGAAATTGTTCCCA AGGGGACACATAGTTGGGGTAGTAAGTCATCCTCATCCTCATCAAACGCATGGGGTTCTTCTACACTGTCTCCGTCTGATGGTGGCACTGGTTCCCCTAG CTATCTCAGTGGCCGTCCTTCATCTGGTGGAAGTGGCACAAGGCCATCAACTGCAGGGAGTGATAGGGGCAATGAACCAATTGCTAATGCGTGGAATTCA AACTCTAGGCCATCATCTGCCTCAGGTTCAGTGACGTCAAATCGGGCATCACTTGGTTCGTCCCGTCCTCGTAGTGCTGAAACAAGGCCTGGTAGCTCTC AGTTATCTCGGTTTGCAGAGCCTTTGTCTGATAATTCAGTACCATGGGGTTCACTTGGGACAGCTGAACGATTGGGGGTTCCATCTTCGAAAAATAATGG ATTTTCACTCACTTCTGGTGATTTCCCGACTCTTGGCTCAGAAAAGGAAGATTTTGAGAAGAACACAGATCTACCAGAGCATGGTTATCGTCGTGATTCG CCCTCTGATGGAGCACCAATGGAAGAGACAAGAGCTGATGTTGTAGGTGAGGATTATGGACCTGTGGATGTGAAGAGTGACAATGCAAATGCTTGGAGAA GAGAGGACTCCTTTTATGTAAAAGAAGGAGTTAGGCCCAATGCTGAGAAATGGCATCCTGATCCTCAATCATATCCTAATGCAACTATGCCTCAACATTT TGATGCTTGGCATGGCCGGCCTGTAAATAATCATCCAGGTGGTGTTTGGTATAGGGGTCCTCCAGTCGGTCCACCATTTGGGGCTCCAGTTGGGCCTGGT GGATATCCAATGGAGCCGTTTCCTTATTACCGGCCTCAGATTCACCCTGGTGCACAGCCAGGGCCTCCGCCATCTGCTGGACCAAGAGGGCCTCATCCAA AACATGGTGATGTCTTCAGACCCCCAATGCATGATGGCTATCTTCGCCCTGGCATGACGATGAGACCTGGATTTTATCCCGCACCCGTTCCTTACGATGG ATATTATGGTCCTCCAATGCCATACAACAATGTTAGTGAGCGAGATGTTCCTTATATGGGAATGGCTGTAGGTCCTGCTGCATATACCAGATATCCAAAT CAAAATTCTCATGAGTCTGGCAATCCCCATGGAAGATCGACTGGGTTTGGTTCTAATGCTAAAGGATTGGTTTCAGAACAAATGGAATCAGGCCATCCCC ATGACCCTCAAGGCCCGTATAAAGTTCTTCTTAAGCAACGTGATGGGTGGGAGGGAAAAAATGGAGCACAGATGTGGGATGGTGACAAGGCAGCCAATGC CGTGCATATTGGGAAGGGAGACCAGTCAAGAAAGTCAAGTTTGGAGAATGGATGGAGAACCGATAATCTAAAGAGAACTGAAGATGTTGGAACACGAAGA CCGCTTTCTGAGGGACATTCTTGCACTGTTGACAATATAAGTGGTGCTCCAGTCAAACTGAAATCTGCCGGACATGGAGGAAATTCATATACACTTGATT GTTCTGTTGATAAAGTATCAGAGCATGCAGAAGACCGAGATTCAATATCAGAATCATTATCATTTTCTAGAGACCCCAGTCTTATTAAGAAAATTGAAGG GTTGAACGCAAAGGCTCGCGCTTCTGATATGCATGATGCGAATGATAAAAAACATGAAAGAATCAGGACGAATCATCCTGTAAATGAAACCACAAGTGTT TCTGTTTCTACGGAACGTGTATTGGCTCAAGGACTCTCTGCCGATTCCAATGATCAGAGTTCTGGTAGAGATAAAAGTCTTGACTTGACAATGACTAGTG GAGCTGCTATGGCAAGATGCAACAGGAGACCGACTCAGGCTGTGCAGATCAGATCTGATCATCGTAAAGGAAGAACTAATGCTCAGGATATTGATGCTTG GAAGCCAAGACTTCATGTTGAAGAATCACATGATGGTGTTTCAAGTGCACATGTAAGTTCGGTTCTGCAGGGGCAAGATTTGTCTACTGAGGCCGCCGAG AAGTCTGTCCCACATCTAGGCAACGATGAGGAGTCAATGCCACAGGCATCTGAACCAATTGATAGTCAGGCACAGCGAGCTAAGATGAGAGAGCTAGCTC GACAGCGACTCAAGCAAAGAGAGAAAGAAGAAGAAGAGCGAACAAGAGAACAGAAGGCCAAGGCTCTTGCAAAGCTAGAAGAGTTGAACAGGCGGATGCA AGCTGGGGAAAGTTCATCTAAGAAGCATGAAGCCATGCCAAGTAGTAATTTGTTGAATAAGCCAGAGTTGCTGAATTCTGTGCAACCACCTGTCGTTGTC AATGCATCTACAGATAATTCTATCATCGCTTCCGACTCAGTTGCAGTTACACATACTAATGACAGAACTATCAACAGAGTTGAAATACCTACCATTCTGT CTAAAGAGGTCAAGAATGTTACTGAAGCACCTGTCATTATGCATGATCCATCTAATTCACTGAATCTGGATTCTGGTGCAGCTCATTGTGATGATGTGTT TAATGATGTTGCACATGATTATGAAGAAAAGGCTTCGAAGCAAAAGCGAATGGCCTATAGGCCAAAGCAGAATAGTTCCAGCGACAAGGTTGCAACTGGA GCATCAAAAAGTGATACTGACACAATTCTTAATGCGTCTCTTCCTCCTCAGAGTGCTGCTCATGATACTGCTTCAAACCCTGTCAGCCCAAGTGCTACAG CCGAGGTTTCAGCACATCCTAGGAGAAAAAATAGGAGTACAAGAAACAAGCAGAGAGTGGAGGAGACATCGTCAACTGCAGTATTGCCAATTGCGGCTTT CAAGAATACTCCTTCAGAAGCTTCAAATGACGGTGTCAAACCAAAAACTCCAGAATCTCTTACAGTTGTTACTTCAGTGCAGCCTGTCCGTGATTGCAAA GGTGCAATTCAGCATTCGGAGCAACATCCAACATCTCCGAATGAAGATGGCCAGATCAAAGTAAATAACCAGTGGAAACCACAACATTCTCGAAAGATGC CAAGGAATTCGCAGGGTAATAAAGCAATGGATAAATTCCATGGAAATGATACTGTTGTCTGGGCTCCAGTACGGATGAACATTAAACCTGAAGGTGCTGA TGAAGGCAGTAAGAAAAGTGCAGTGGATGTTGCTAGTCTACCTGTAAAGAGCGATCAGCTGGTGCATAATAATACAAAGAACAAGAGAGCTGAAATGGAG AGATATGTTCCGAAGCCAGTAGCCAAAGAAATGGCTCAGCAGGGAAATACTCACCATTCTGTGGCTTCTTCAACTGTCCAGATACCCTCAGATGAAACTG TTAGAAAATCTGAACCTGTTCCTTTGGCGCCAGAAAGTTCACAAACCACCTTCACCCTTAAGTTTGGATCCTTTGCCGAGTCTGAGAATGTGGACGCCAA ACAGAGCAAGTCTGGGAAAGTACATGGGTCGTGGCATGAACGATCTTCTGCAGAAATACAGACTTCTAGTTCAAATCTGGATGGGGATTCGCAGAAGCCA ATCAAGTGTCAGCAAATTCAGAAGTCAGACACAGGTTCAATCAAAGAGCAATCAGGACAAAATGATGAATGGTCAGATGGATGGACCATGCCTGAGAATC CTGATACAGCACCAGCATTTCCTAGTGTAAAAGATCAGGGAGGTACATCAAGAGGAAGGCGTCAGCCGCACAAGGGGCAGAGAGGACACAACTACGACAT TGTTGAGAGGAAAACTGGTAATGGGGCCAATGAAAAGGTTAATACCGTTTCTTCCGCTGTGGAGCCGCACCAACCTGCTGCAATGCTGACATCAAAAGAA TACTCTGGTGTTGGAGAACGATCTACATCCCAATGGCAACCTAAGTCTCAGTCAACTTCTGCTACTGGCCAACGGGGAATCAGGCCCAATGCTGCTCCGG AAGCTAGCAGTAGGCCAAATAGAAGGAGTTTGGCGTCTGTGCCGCCTCAAACACAGGAGGTAGCTGGAGGGTCAACCGAACAGTACCCGGATCAATCTGC CTGTAACCCTGCAGAGGGAAATTATGTTGAAGACTTCAATCAAGGTGCTAGGAGGGAGAGGAAGATGACTTCTCACAAAGGTCATGCCCGTAACCCTGCA GAGGCAGCTTATGCTGCAAATCCAGATAACCGTAATGAACAATACCAAAACTACTCGTCAGGGTATCGAAGGGGCGGAAACCAGAATAATCAGGTCAACA GGGATCAAGAGGCTCGTGGGGAGTGGAGTCGAAGCGAGAAAGATAACAAGCACCATAATGTAGCAGCAGGAAACAGGGAAAGGCAGAGACAAGGTACACA TTATGAGTACCAGCCGGTTGGCAATAAAAACAAGGGAAATAACTTTGAGCCTTCAAGAGATGGATCTCAAACTTCAGGTCCAAGGTTTAGGGAAAGAGTG CAGAACCATCCAAGGCCTGGCGATTTTCATGGACGTCAAACCAGCAGCATGCGGGTAGATACTACTACTACTACTACTACTACTACTAATTTTGATTAG
AA sequence Show only first row Show all	>Lus10042094 pacid=23153751 polypeptide=Lus10042094 locus=Lus10042094.g ID=Lus10042094.BGIv1.0 annot-version=v1.0 MTVLGKVAVPKPINLPSQRLENHGVDPNVEIVPKGTHSWGSKSSSSSSNAWGSSTLSPSDGGTGSPSYLSGRPSSGGSGTRPSTAGSDRGNEPIANAWNS NSRPSSASGSVTSNRASLGSSRPRSAETRPGSSQLSRFAEPLSDNSVPWGSLGTAERLGVPSSKNNGFSLTSGDFPTLGSEKEDFEKNTDLPEHGYRRDS PSDGAPMEETRADVVGEDYGPVDVKSDNANAWRREDSFYVKEGVRPNAEKWHPDPQSYPNATMPQHFDAWHGRPVNNHPGGVWYRGPPVGPPFGAPVGPG GYPMEPFPYYRPQIHPGAQPGPPPSAGPRGPHPKHGDVFRPPMHDGYLRPGMTMRPGFYPAPVPYDGYYGPPMPYNNVSERDVPYMGMAVGPAAYTRYPN QNSHESGNPHGRSTGFGSNAKGLVSEQMESGHPHDPQGPYKVLLKQRDGWEGKNGAQMWDGDKAANAVHIGKGDQSRKSSLENGWRTDNLKRTEDVGTRR PLSEGHSCTVDNISGAPVKLKSAGHGGNSYTLDCSVDKVSEHAEDRDSISESLSFSRDPSLIKKIEGLNAKARASDMHDANDKKHERIRTNHPVNETTSV SVSTERVLAQGLSADSNDQSSGRDKSLDLTMTSGAAMARCNRRPTQAVQIRSDHRKGRTNAQDIDAWKPRLHVEESHDGVSSAHVSSVLQGQDLSTEAAE KSVPHLGNDEESMPQASEPIDSQAQRAKMRELARQRLKQREKEEEERTREQKAKALAKLEELNRRMQAGESSSKKHEAMPSSNLLNKPELLNSVQPPVVV NASTDNSIIASDSVAVTHTNDRTINRVEIPTILSKEVKNVTEAPVIMHDPSNSLNLDSGAAHCDDVFNDVAHDYEEKASKQKRMAYRPKQNSSSDKVATG ASKSDTDTILNASLPPQSAAHDTASNPVSPSATAEVSAHPRRKNRSTRNKQRVEETSSTAVLPIAAFKNTPSEASNDGVKPKTPESLTVVTSVQPVRDCK GAIQHSEQHPTSPNEDGQIKVNNQWKPQHSRKMPRNSQGNKAMDKFHGNDTVVWAPVRMNIKPEGADEGSKKSAVDVASLPVKSDQLVHNNTKNKRAEME RYVPKPVAKEMAQQGNTHHSVASSTVQIPSDETVRKSEPVPLAPESSQTTFTLKFGSFAESENVDAKQSKSGKVHGSWHERSSAEIQTSSSNLDGDSQKP IKCQQIQKSDTGSIKEQSGQNDEWSDGWTMPENPDTAPAFPSVKDQGGTSRGRRQPHKGQRGHNYDIVERKTGNGANEKVNTVSSAVEPHQPAAMLTSKE YSGVGERSTSQWQPKSQSTSATGQRGIRPNAAPEASSRPNRRSLASVPPQTQEVAGGSTEQYPDQSACNPAEGNYVEDFNQGARRERKMTSHKGHARNPA EAAYAANPDNRNEQYQNYSSGYRRGGNQNNQVNRDQEARGEWSRSEKDNKHHNVAAGNRERQRQGTHYEYQPVGNKNKGNNFEPSRDGSQTSGPRFRERV QNHPRPGDFHGRQTSSMRVDTTTTTTTTTNFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	0	1
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	2.0	0.9345
					Lus10005528 [exp]	2.0	0.9139
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	3.0	0.9428
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10007993 [exp]	3.5	0.9045
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	4.2	0.9204
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10025331 [exp]	5.3	0.8738
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	6.9	0.9004
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	9.2	0.9091
AT3G17900			unknown protein		Lus10036712 [exp]	11.3	0.8708
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	15.5	0.8912

Compare expression of checked genes

Lus10042094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.