Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45970 131 / 4e-36 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT4G38400 129 / 2e-35 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 125 / 1e-34 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G17030 119 / 8e-32 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT1G65680 72 / 4e-14 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 64 / 1e-11 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 63 / 2e-11 EXPB6 beta expansin 6 (.1) AT4G28250 62 / 5e-11 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 61 / 1e-10 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001244 [exp] 456 / 3e-163 AT4G17030 153 / 3e-45 expansin-like B1 (.1) Lus10030931 [exp] 325 / 6e-112 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10040115 [exp] 177 / 6e-53 AT4G17030 123 / 4e-33 expansin-like B1 (.1) Lus10022639 [exp] 150 / 2e-43 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10003336 [exp] 150 / 2e-43 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10001009 [exp] 143 / 8e-41 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 141 / 3e-40 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 134 / 2e-37 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10040149 [exp] 126 / 1e-34 AT4G17030 221 / 2e-72 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087000 [exp] 327 / 1e-112 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 325 / 8e-112 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G083200 [exp] 147 / 1e-42 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 138 / 9e-39 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.009G141400 [exp] 135 / 2e-37 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 129 / 3e-35 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.014G066300 [exp] 70 / 1e-13 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.013G134300 [exp] 69 / 4e-13 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 67 / 1e-12 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.016G097500 [exp] 45 / 2e-05 AT2G39700 301 / 6e-103 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10042095 pacid=23153843 polypeptide=Lus10042095 locus=Lus10042095.g ID=Lus10042095.BGIv1.0 annot-version=v1.0 ATGGCTAACCCTCTTCAATTCCTTGCTGCAAGTTTTGTACTTGTCTTGATTCACAGTACTGCATCACATGCTGCAACATGCGGCAGTGACGACTGCTTCA CTTCTTCTCGAGCTGCTCACTATCCCAACTCCGAGGAGTTCGGAACAGCTTCAGGAGCATGTGGGTTTGGTTCATTTGGAGCAACACTGAATGGAGGAGA AGTGGCCGCTGTATCTGATCTGTACCGCAACGGCATTGGCTGCGGTGCTTGCTATCAGGTTAAACTCCACTTCGAAAAACCGAATCTATCATCAAGACCT AATTCTGGTTCGATTTTTGTGTCACTCAAAAAGTTTGGTTCAAAACAGGTGAAGTGCACCAATAGCAACTACTGTACAGACAAAGGAACAACAGTCGTGA TAACCGACCAAGGAACGAGCCATAACACCGGGTTCATCCTTAGCAGACGAGCCATCTCTGGGATGGCTCAGACTAAAGACTCGGCTGCATCACTGCTAGC CCTTGGCATCATAGACATCGAATATAAACGGGTTTCATGCAGCTACCCGAACAAGAACGTAACGATAAAGATCGATGAGAATAGCAACTACCCTCACTAC CTTGCCTTTGTCATATGGTATCAGCAAGGCCAGCGAGATGTTACTGCTGTGCATCTCTGTGAGGTATGGATACTTCTGTTGATAGAGAAGGTTATGAGGA ATGTGTGCTTAGAACCGAACAAGAACCGTTGGTCAGATCGTGAACGACCACTAAACCAGTTCAGTCTAACACAGAATTTCACATGCAAGGTTCTGGAGAG GAGCTATGGAGCAGTGTGGACAGTGACCTCACCACCTACGGGACTATTATCGCTGAGGATGTTGTTCACCGACGAAAATGGTGATGAGGCCCGGGGCGTC CCTGCAACCAGCATACCGAGTAACTGGAAAGCTGGAGATTTATATGACACTGGATTGCAAGTGAACCTTTGA
AA sequence Show only first row Show all	>Lus10042095 pacid=23153843 polypeptide=Lus10042095 locus=Lus10042095.g ID=Lus10042095.BGIv1.0 annot-version=v1.0 MANPLQFLAASFVLVLIHSTASHAATCGSDDCFTSSRAAHYPNSEEFGTASGACGFGSFGATLNGGEVAAVSDLYRNGIGCGACYQVKLHFEKPNLSSRP NSGSIFVSLKKFGSKQVKCTNSNYCTDKGTTVVITDQGTSHNTGFILSRRAISGMAQTKDSAASLLALGIIDIEYKRVSCSYPNKNVTIKIDENSNYPHY LAFVIWYQQGQRDVTAVHLCEVWILLLIEKVMRNVCLEPNKNRWSDRERPLNQFSLTQNFTCKVLERSYGAVWTVTSPPTGLLSLRMLFTDENGDEARGV PATSIPSNWKAGDLYDTGLQVNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	0	1
AT5G19875			unknown protein		Lus10006311 [exp]	1.4	0.9353
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	2.2	0.9488
AT1G14930			Polyketide cyclase/dehydrase a...		Lus10042490 [exp]	2.6	0.9028
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10035467 [exp]	3.0	0.9330
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10021078 [exp]	4.7	0.9010
AT2G02850		ARPN	plantacyanin (.1)		Lus10028641 [exp]	5.5	0.9013
					Lus10022836 [exp]	6.0	0.8451
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	7.1	0.9074
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	10.2	0.9105
AT2G02850		ARPN	plantacyanin (.1)		Lus10018938 [exp]	11.0	0.8560

Compare expression of checked genes

Lus10042095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.