Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29880 1159 / 0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) AT1G29870 570 / 0 tRNA synthetase class II (G, H, P and S) family protein (.1) AT3G44740 243 / 3e-75 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029203 [exp] 1189 / 0 AT1G29880 1067 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10008792 [exp] 1166 / 0 AT1G29880 1057 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10036929 [exp] 188 / 6e-51 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036930 [exp] 113 / 1e-29 AT1G29880 92 / 4e-23 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162300 [exp] 1195 / 0 AT1G29880 1192 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Potri.001G067800 [exp] 1191 / 0 AT1G29880 1203 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [flax] [poplar] S15_NS1 PF00458 [flax] [poplar] WHEP-TRS WHEP-TRS domain CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10042096 pacid=23153692 polypeptide=Lus10042096 locus=Lus10042096.g ID=Lus10042096.BGIv1.0 annot-version=v1.0 ATGAGATTTTGCTGTGCTCTAGTATCCGCCGCATCTGCTCATTTCGTCCGTCGCCGTGTTGGTAACAGATGTACCTTATCCTCTCGAACACTTCGTCACT CCTTCTCCACCATAGACGCAGCAGAAGCTACTGAGGACTCGCTCCGCCGTGATCTCGCCGAAAAGCAGTCCGCAGTTGAAGCGCAGGGGAACAAGGTCCG TGCCTTAAAAGCTGCCAAAGCAGACAAGTCAGAGATCGATTCGGCGATCGAATCGCTGAACGCGCTGAAGGTAGAGAGGTCGCCCGTGGAGAAGCAGCTC TCGTCTGGTGACGGAAGCTCTTCCAGGGAGGCGTTCCGTCAGGCAGTCGGGAACACTCTTGAGCGGAGACTGTTCTACATTCCGTCTTTCAAGATTTACA GAGGCGTTGCTGGACTGTACGACTATGGACCTCCTGGTTGCTCTGTGAAGTCCAATGTCCTCGCGGTCTGGCGCCAGCATTTTGTGTTGGAGGAGAACAT GTTAGAAGTGGACTGCCCATGTGTGACACCAGAGGTGGTACTCAAAGCATCAGGTCATATGGATAAATTCACTGATCTCATGGTTAAGGATGAGGAAACA GGGACCTGCTACCGAGCTGATCACTTGCTTAAGGACTTCTGCAATGAGAAGCTTCAGAAAGATCTTACCTTAACTGCAGAGAAGTCAAAAGAACTTAAAC ATATACTTGCTGTTTTGGATGATCTCTCTTCTGAGGAGCTCGGTGCCAAGATCAAGGAGTATGACATTACAGCTCCAGACACAAAAAATCCGCTTTCGGA TCCCTATCCATTCAACTTGATGTTTCAAACTTCCATTGGCCCATCAGGGTTGAGCTCCGGCTTCATGCGTCCTGAAACGGCACAAGGGATATTTGTGAAT TTCAAGGATTTGTACTACTACAATGGGAACAAACTTCCGTTCGCTGCTGCTCAGATTGGCCAAGCCTTTAGAAATGAGATTTCTCCCCGACAAGGCCTAC TGAGAGTTCGTGAGTTCACATTAGCAGAGATTGAGCACTTTGTGGACCCCGAAGACAAGACACACCCAAAGTATGCTGAAGTTGCAAATCTAGAGTTCCT GATGTTCCCTAGGGAAGAGCAGATGTCTGGCCAGTCAGCAGAGCTAATTCAACTTGGCGATGCCGTATCAAAGGGTATTGTCAACAACGAAACTCTTGGC TATTTCATCGGCAGAGTTTACCTCTTCCTAACTCGACTCGGTATCAACAAGAACCGGTTACGATTCCGGCAGCATCTTGCACATGAAATGGCACATTATG CTGCCGACTGTTGGGATGCAGAGATTGAATGTTCATATGGTTGGATCGAGTGTGTTGGTATTGCAGATAGGTCTGCATATGATCTGCGTGCCCATTCGGA AAAGAGTGGCGTTGCACTTGTTGCCGCTGAAAAGTTTGCACAACCTAGGGAAGTTGAGAAATTGGTAATCACACCAGTGAAGAAGGAGCTTGGCCTTGCA TTTAAAGGTAACCAAAAGAACGTTGTTGAAGCCTTGGAGGCAATGCCAGAAAAAGAAGCCATGGAAATGAAGGCTGCTCTAGAATCCAAAGGTGAGATGG AGTTCTACGTTTGCACTCTCAGCAAAAACGTCGTCATCAAGAAGAACATGCTCTCTATCTCTAAGGAGAAGAAAAAGGAACACCAAAGGGTCTTCACACC ATCAGTCATCGAGCCATCGTTCGGCATTGGACGCATCATATACTGCCTCTTCGAACACTCCTTCTACACCAGGCCTAGCAAAGCCGGGGACGAGCAGCTG AACGTGTTCCGGTTCCCTCCTCTCGTCGCCCCCATCAAATGCACCGTGTTCCCCCTCGTCCAGAACCCACAGTTCGATGACGTCGCCAAAACCATTTCCA GGTCGTTGACTGCTGCTGGGATCTCCCACAAGATCGATGTCACAGGTACCTCGATAGGGAAGCGATACGCTAGGACAGACGAGCTGGGGGTGCCCTTTGC TATTACGGTCGATTCAGCTGATTCGGTTACAATCAGGGAGAGGGACAGCAAGGATCAGATCAGAGTGAAGCTGGAAGATGTGGCTTCAGTTGTCAAGTCG GTAAGTGATGGCCAGACCACATGGGAAGATGTTTGGTCGAGGTTTCCTCATCACTCCGCTGCATCTGCCGATGAATAG
AA sequence Show only first row Show all	>Lus10042096 pacid=23153692 polypeptide=Lus10042096 locus=Lus10042096.g ID=Lus10042096.BGIv1.0 annot-version=v1.0 MRFCCALVSAASAHFVRRRVGNRCTLSSRTLRHSFSTIDAAEATEDSLRRDLAEKQSAVEAQGNKVRALKAAKADKSEIDSAIESLNALKVERSPVEKQL SSGDGSSSREAFRQAVGNTLERRLFYIPSFKIYRGVAGLYDYGPPGCSVKSNVLAVWRQHFVLEENMLEVDCPCVTPEVVLKASGHMDKFTDLMVKDEET GTCYRADHLLKDFCNEKLQKDLTLTAEKSKELKHILAVLDDLSSEELGAKIKEYDITAPDTKNPLSDPYPFNLMFQTSIGPSGLSSGFMRPETAQGIFVN FKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKTHPKYAEVANLEFLMFPREEQMSGQSAELIQLGDAVSKGIVNNETLG YFIGRVYLFLTRLGINKNRLRFRQHLAHEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSEKSGVALVAAEKFAQPREVEKLVITPVKKELGLA FKGNQKNVVEALEAMPEKEAMEMKAALESKGEMEFYVCTLSKNVVIKKNMLSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPSKAGDEQL NVFRFPPLVAPIKCTVFPLVQNPQFDDVAKTISRSLTAAGISHKIDVTGTSIGKRYARTDELGVPFAITVDSADSVTIRERDSKDQIRVKLEDVASVVKS VSDGQTTWEDVWSRFPHHSAASADE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10042096 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	2.6	0.8030
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10034118 [exp]	7.7	0.7170
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	13.3	0.7792
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	13.9	0.7873
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	20.3	0.7709
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	21.7	0.7647
AT2G36810			ARM repeat superfamily protein...		Lus10014405 [exp]	24.9	0.7444
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	27.6	0.7440
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	27.6	0.7524
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	29.3	0.7366

Compare expression of checked genes

Lus10042096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.