Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001241 [exp] 185 / 2e-62 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042098 pacid=23153573 polypeptide=Lus10042098 locus=Lus10042098.g ID=Lus10042098.BGIv1.0 annot-version=v1.0 ATGGCAAAGGTAGTTCGAGGTCTCAAATCCGGTTTCTTCAACATCGTCGGAGCTCTCAAGGGCGGCGGCCGACCAACCACCGTCGACGAACCAGTTCCCC TGTCACCGACTCCTGCAACTACTGCCGCCGGGAAGAGCAATGAAATAGTTTATGCGGGCGAAGCTCAGAAACAAGCGGTCGTCCACATAGGAGAAGCTCG TGAGGATCTATACGTGGAAGCTTCCGAGTTCAAATCCGTTCAGGTGTTGAAAATGGTCCGATCTAGAGAACCGGGAGGAGTACCTAAAGGTTCTCGTCCA GGAACTGGCTGA
AA sequence Show only first row Show all	>Lus10042098 pacid=23153573 polypeptide=Lus10042098 locus=Lus10042098.g ID=Lus10042098.BGIv1.0 annot-version=v1.0 MAKVVRGLKSGFFNIVGALKGGGRPTTVDEPVPLSPTPATTAAGKSNEIVYAGEAQKQAVVHIGEAREDLYVEASEFKSVQVLKMVRSREPGGVPKGSRP GTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042098 [exp]	0	1
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	6.9	0.8058
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	24.2	0.8236
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10007698 [exp]	27.5	0.8131
					Lus10027950 [exp]	27.7	0.8222
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	31.7	0.8411
AT5G62960			unknown protein		Lus10032130 [exp]	34.9	0.8067
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	35.3	0.7948
AT4G04750			Major facilitator superfamily ...		Lus10000924 [exp]	43.2	0.8332
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10002490 [exp]	49.3	0.7615
AT5G22050			Protein kinase superfamily pro...		Lus10013365 [exp]	55.5	0.7841

Compare expression of checked genes

Lus10042098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.