Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19100 667 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36280 476 / 2e-158 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36290 463 / 3e-153 CRT1 compromised recognition of TCV 1 (.1) AT5G50780 416 / 5e-133 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G24970 408 / 3e-131 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 388 / 2e-123 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36270 319 / 7e-100 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001240 [exp] 964 / 0 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10039959 [exp] 797 / 0 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 444 / 1e-146 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10041578 [exp] 393 / 2e-125 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016745 [exp] 386 / 2e-122 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 382 / 1e-120 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 314 / 3e-98 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089000 [exp] 781 / 0 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G079400 [exp] 748 / 0 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 460 / 6e-152 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.015G100900 [exp] 413 / 2e-131 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G102800 [exp] 407 / 2e-129 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 396 / 2e-125 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 110 / 1e-24 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10042100 pacid=23153522 polypeptide=Lus10042100 locus=Lus10042100.g ID=Lus10042100.BGIv1.0 annot-version=v1.0 ATGCAAGCTGTTAAACTGGAACCAGATCTTGTGACTGTTGAATCTCAAGGAAAAGACAAGTACGCGACCCAATCTAGTAGACAAGAGTGTGAGGAGAATA GAAGCCCAAATACCTTAACCACTGGCCAAACTGGCTCTAGTGTGTTAGAGCAGGTTCAGTCTCCTGTAGATGATACTGGCGTTTCTCCAGCCTCAACCTT GCCTTCAGCACCGCTTTGTCGACAGTTTTGGAAGGCTGGGAGCTATACTAATGCACATGGCTCCAAGGTCAATCTTCAAAGTGGAAAAACTTACCTCCAT GTTCACCCCATGTTTCTTCATTCAAATGCCACTTCGCATAAATGGGCATTTGGTGCAATTGCAGAATTGCTTGACAATGCCATTGATGAGATACAAAATG GCGCCAGTTTTGTCATTGTAGATAAAATCTCAAGTCCAAGAGATGGGCTTCCCGCATTACTTATTCAAGATGATGGTGGGGGAATGAACCTTGAAGCAAT GCGGCGATGTATGAGTTTTGGTTTCTCTGATAAGAAATCTGCTGGATCTATTGGACAGTATGGCAATGGCTTCAAAACCAGCACCATGAGGCTTGGAGCT GATATGGTTAGCATGCAAGCTGTTAAACTGGAACCAGATCTTGTGACTGTTGAATCTCAAGGAAAAGACAAGTACGCGACCCAATCTAGTAGACAAGAGT GTGAGGAGAATAGAAGCCCAAATACCTTAACCACTGGCCAAACTGGCTCTAGTGTGTTAGAGCAGGTTCAGTCTCCTGTAGATGATACTGGCGTTTCTCC AGCCTCAACCTTGCCTTCAGCACCGCTTTGTCGACAGTTTTGGAAGGCTGGGAGCTATACTAATGCACATGGCTCCAAGGTCAATCTTCAAAGTGGAAAA ACTTACCTCCATGTTCACCCCATGTTTCTTCATTCAAATGCCACTTCGCATAAATGGGCATTTGGTGCAATTGCAGAATTGCTTGACAATGCCATTGATG AGATACAAAATGGCGCCAGTTTTGTCATTGTAGATAAAATCTCAAGTCCAAGAGATGGGCTTCCCGCATTACTTATTCAAGATGATGGTGGGGGAATGAA CCTTGAAGCAATGCGGCGATGTATGAGTTTTGGTTTCTCTGATAAGAAATCTGCTGGATCTATTGGACAGTATGGCAATGGCTTCAAAACCAGCACCATG AGGCTTGGAGCTGATGTTATTGTCTTCACTCGGCATATGGAAGATAGAACTGCCACCATAGGTCTCCTATCCTATACATTCTTAATGCAGATGGGCCATG ATCGAATAATAGTTCCAATGGTGGATTATGAGTTTAATAAAGAAAATAACAAGTTCGAAGTTTCACGACGGCAGACCAAGGAGTCTTCCAAAGCAAATCT TTCGCTACTCGTGCGATGGTCTCCGTATTCTACGGAAGCAGAGCTTTTGAAGCAGTTTGATGATATTGGTTTGCACGGGACAAAAGTTATGATTTATAAC CTGTGGTGCAATGATGACGGGAATACGGAGTTGGACTTTGATACAGATCATCAGGACATTCGTATAGAAGGTGCTATGAGAAAGAATGAATCTCTTCCTG CTTGGAGGACAGTAAATGAACAGCACATCAGCAATCGGCTACATTACTCTCTCCATGCATATATGTCCATCTTGTACCTGCAGATTCCTGACAATTTCAG TATAACGTTGCGTGGACAAGTTGTTAGGCCCCTTAATCTTGCTGATGACCTCAAATATCAACAATATATTATCTACAGGCCTCATTGTGGTGGATTAAAG GAGAATCATGTGATCACTACGATTGGGTTTCTAAACGATGCTCCACGTATCGCTATCCATGGCTTCAATATTTATCACAAGAATCGTCTAATTCAGCCTT TTATGCAAGTTGTAAGGTATGCTGACAGTAGGGGCAGAGGAGTGGTAGGTATTCTTGAAGCAAACTTTATCAAGCCAACTCATAACAAACAGGACTTCGA GAGAACTTCCCTTTTCCAGAAACTTGAAGTTCGGCTGAAGGAGATGACATTTGAATACTGGGACTTCCATTGTGGACTGATTGGATACCAGGTCAAAAAG AAGGTTAGCGCAGTGAAGTTTCCAAACATGCCTCCTGTCATAGCACATACTCGCCATGAAAATCCTGTAATCCCGAATCGAACCTTTCCAACTGTTGGTA CAGCAAACGAAACTTTTCCTGGCACCAAGAGAAAAGAGCACAACTACTCGGGGAAAACTGAAAGTGTTAGGAAGATGTCAAGAACTGGAGAACACATCTC TCAGCAGCAGAATGAGGTTGCAATTTTGACGCTGGACAGCAATGAGCTTCGAGCACAGTTATACGGGTACGAGACCCGAAAGGAAGAGCTCAATCTACGG GTGATGCAGCTTACCCAGGAGCTCAAAGAAGCAAACAGCGAGTACAGTCGGCTCATGGCGGAACTGAGTTTACTGGGTGAAGTGAAGGAGGAGGATCCGG TGGTAAATATGTGA
AA sequence Show only first row Show all	>Lus10042100 pacid=23153522 polypeptide=Lus10042100 locus=Lus10042100.g ID=Lus10042100.BGIv1.0 annot-version=v1.0 MQAVKLEPDLVTVESQGKDKYATQSSRQECEENRSPNTLTTGQTGSSVLEQVQSPVDDTGVSPASTLPSAPLCRQFWKAGSYTNAHGSKVNLQSGKTYLH VHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGASFVIVDKISSPRDGLPALLIQDDGGGMNLEAMRRCMSFGFSDKKSAGSIGQYGNGFKTSTMRLGA DMVSMQAVKLEPDLVTVESQGKDKYATQSSRQECEENRSPNTLTTGQTGSSVLEQVQSPVDDTGVSPASTLPSAPLCRQFWKAGSYTNAHGSKVNLQSGK TYLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGASFVIVDKISSPRDGLPALLIQDDGGGMNLEAMRRCMSFGFSDKKSAGSIGQYGNGFKTSTM RLGADVIVFTRHMEDRTATIGLLSYTFLMQMGHDRIIVPMVDYEFNKENNKFEVSRRQTKESSKANLSLLVRWSPYSTEAELLKQFDDIGLHGTKVMIYN LWCNDDGNTELDFDTDHQDIRIEGAMRKNESLPAWRTVNEQHISNRLHYSLHAYMSILYLQIPDNFSITLRGQVVRPLNLADDLKYQQYIIYRPHCGGLK ENHVITTIGFLNDAPRIAIHGFNIYHKNRLIQPFMQVVRYADSRGRGVVGILEANFIKPTHNKQDFERTSLFQKLEVRLKEMTFEYWDFHCGLIGYQVKK KVSAVKFPNMPPVIAHTRHENPVIPNRTFPTVGTANETFPGTKRKEHNYSGKTESVRKMSRTGEHISQQQNEVAILTLDSNELRAQLYGYETRKEELNLR VMQLTQELKEANSEYSRLMAELSLLGEVKEEDPVVNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	0	1
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	1.0	0.9215
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	1.4	0.9135
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	4.2	0.8980
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008854 [exp]	4.9	0.8582
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	4.9	0.8807
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	5.3	0.8617
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	5.5	0.8559
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10040931 [exp]	6.0	0.8518
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	6.5	0.8406
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	6.7	0.8685

Compare expression of checked genes

Lus10042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.