Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70510 119 / 2e-33 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 117 / 1e-32 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT4G08150 90 / 6e-22 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 87 / 8e-21 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT1G62990 59 / 4e-11 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G14760 43 / 1e-05 KNATM KNOX Arabidopsis thaliana meinox (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001238 [exp] 241 / 5e-80 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10013037 [exp] 112 / 2e-30 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 111 / 3e-30 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 73 / 8e-16 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10028244 [exp] 66 / 2e-13 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10001195 [exp] 62 / 1e-12 AT1G62990 189 / 2e-60 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001941 [exp] 42 / 5e-05 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 42 / 6e-05 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10035319 [exp] 0 / 1 AT1G62360 86 / 1e-30 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079100 [exp] 133 / 2e-38 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.012G087100 [exp] 129 / 7e-37 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 116 / 2e-32 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 112 / 8e-31 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 112 / 8e-31 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 110 / 6e-30 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.002G113300 [exp] 97 / 1e-24 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.006G270401 [exp] 88 / 3e-21 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.011G011101 [exp] 88 / 3e-21 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 86 / 1e-20 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03791 [flax] [poplar] KNOX2 KNOX2 domain PF03790 [flax] [poplar] KNOX1 KNOX1 domain
Representative CDS sequence Show only first row Show all	>Lus10042103 pacid=23153564 polypeptide=Lus10042103 locus=Lus10042103.g ID=Lus10042103.BGIv1.0 annot-version=v1.0 ATGTTCTGTCCGTCGTCGGGGGGATCGTCTTCTGTATCCGATGCTGCCTCCACGGCGCAGCTGCCTCCGCAAGAAGACCAGACTGAAAGTGAGATTAGAG CGAAGATTTCAGCTCATCCTCTTTACCCTAGGCTGATTCAAGCTTATGTCGATTGCCAGAAGGTTGGAGCTCCGGCTGAGATGGCGTTTCTACTTGAAGA GATCAGGCAACAAAGTCATCATCTCTTATCCTACCAAAATACCAGTGCGGATCCGGAGCTTGACGATTTCATGGAGAGATACCACGAGATATTGGTGAAG TACAAATGGGAATTGTGGAAGCCGTTTGAGGAAGCCACCACCTTCTTGAGTGATATTCAATCTCAATTCCATACCCTCTGCGGCGCTGATGCTCCACCTG CCATACACGTTTCAGGTGGGTTTTCCGATGCTTTTCCTTGA
AA sequence Show only first row Show all	>Lus10042103 pacid=23153564 polypeptide=Lus10042103 locus=Lus10042103.g ID=Lus10042103.BGIv1.0 annot-version=v1.0 MFCPSSGGSSSVSDAASTAQLPPQEDQTESEIRAKISAHPLYPRLIQAYVDCQKVGAPAEMAFLLEEIRQQSHHLLSYQNTSADPELDDFMERYHEILVK YKWELWKPFEEATTFLSDIQSQFHTLCGADAPPAIHVSGGFSDAFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70510	HD	ATK1, KNAT2	ARABIDOPSIS THALIANA KN 1, KNO...		Lus10042103 [exp]	0	1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10042102 [exp]	1.0	0.9599
AT1G16290			unknown protein		Lus10036958 [exp]	8.2	0.9298
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10001238 [exp]	18.3	0.9124
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	22.0	0.9144
					Lus10041871 [exp]	23.0	0.9197
AT5G01660			unknown protein		Lus10018307 [exp]	25.3	0.9124
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	29.9	0.9075
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	35.3	0.9022
					Lus10002045 [exp]	37.3	0.9034
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	41.5	0.9048

Compare expression of checked genes

Lus10042103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.