Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50290 363 / 3e-126 unknown protein AT3G17350 148 / 2e-42 unknown protein AT1G11915 100 / 2e-24 unknown protein AT1G10380 96 / 9e-23 Putative membrane lipoprotein (.1) AT1G21240 47 / 1e-05 WAK3 wall associated kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001236 [exp] 518 / 0 AT5G50290 368 / 2e-128 unknown protein Lus10043098 [exp] 137 / 6e-38 AT3G17350 334 / 7e-115 unknown protein Lus10037078 [exp] 123 / 3e-32 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036687 [exp] 106 / 1e-26 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 102 / 3e-25 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10036906 [exp] 100 / 1e-24 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10038443 [exp] 82 / 1e-17 AT1G11915 365 / 2e-126 unknown protein Lus10023362 [exp] 79 / 2e-16 AT1G11915 360 / 2e-124 unknown protein Lus10037236 [exp] 66 / 8e-13 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078700 [exp] 399 / 1e-140 AT5G50290 387 / 4e-136 unknown protein Potri.008G099800 [exp] 154 / 8e-45 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 153 / 2e-44 AT3G17350 339 / 4e-117 unknown protein Potri.010G158500 [exp] 125 / 9e-34 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 125 / 1e-33 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 100 / 4e-24 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G040500 [exp] 97 / 4e-23 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.011G007900 [exp] 90 / 2e-20 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 86 / 7e-19 AT1G11915 360 / 1e-124 unknown protein Potri.005G021300 [exp] 50 / 3e-07 AT5G02070 130 / 5e-35 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042105 pacid=23153645 polypeptide=Lus10042105 locus=Lus10042105.g ID=Lus10042105.BGIv1.0 annot-version=v1.0 ATGCCAACTCCTTTCTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTCTCACCACTCGCCGCCGGAACGAGCTGCCGATCATACT GCGGCAACATAACCGTGGACTACCCGTTCTCGCTCCGCGACGGCTGTGGCCACCCGGGGTTTCGAGACCTCCTCTTCTGCTTCGACTCCGTACTGATGTT TCACATCGCTTCCGGATCTTACCGCGTCATGGAAATCGATTACCCTTACCGCTCCCTTACCCTCCACGACCCTCATCTGTCCACCTGCGACGAGGTCATT TTGGGCTCCAAGGGCAATGGCTTTGTCCTCGAATCCTGGCGATCACCTTATTTTACGCCTTCTCCCAACAACGTCTTCATGCTCATCGGCTGCTCCTCCC GATCCCCTCTCTTTCAGGGATTCCCAGCCAAGCACCTCCCTTGCGGGAACGTGTCCGGGATGGGTTGCGAAGAGTACTACGGGTGCCCGGCCTGGGACAA AGTCGGTCACCGGAGGAGCTCCGATTCCCGAACATACGGGTCAAATCCGCCAGAGTGCTGTGCGGTGCCGTTTGAGGCAATCAAGGCCATTAACTTGAGC AGGCTTGAGTGTGAAGGTTACAGCAGCGCGTACAACTTGGCACCGATTCGGACCAATGGGCCGGGCGAATGGTCGTACGGAATCCGAGTTAAGTACTCGG TTCAAGGGACTGAGGAGTTTTGTAGGGCTTGCGAGGCCACAGGCGGGACCTGTGGGTTCGGGTCGGATGGGGTCCGGCAGCTGTGTATGTGCTCCGGGTT TAATTCCACGTCCAATTGCGATAAGGCCAGTGCCCATTATTTGACTCGGTTATTGACTGGATGTGGTGATGTGGAGCAGAAATCTCAGCCTCAAGTGGAA CAAGGGAAAGGGGAATGGAATTGA
AA sequence Show only first row Show all	>Lus10042105 pacid=23153645 polypeptide=Lus10042105 locus=Lus10042105.g ID=Lus10042105.BGIv1.0 annot-version=v1.0 MPTPFSLFFFFFFFFLFFFLFSPLAAGTSCRSYCGNITVDYPFSLRDGCGHPGFRDLLFCFDSVLMFHIASGSYRVMEIDYPYRSLTLHDPHLSTCDEVI LGSKGNGFVLESWRSPYFTPSPNNVFMLIGCSSRSPLFQGFPAKHLPCGNVSGMGCEEYYGCPAWDKVGHRRSSDSRTYGSNPPECCAVPFEAIKAINLS RLECEGYSSAYNLAPIRTNGPGEWSYGIRVKYSVQGTEEFCRACEATGGTCGFGSDGVRQLCMCSGFNSTSNCDKASAHYLTRLLTGCGDVEQKSQPQVE QGKGEWN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50290			unknown protein		Lus10042105 [exp]	0	1
AT5G50290			unknown protein		Lus10001236 [exp]	1.0	0.9595
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	3.0	0.9458
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10042284 [exp]	3.5	0.9435
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	4.9	0.9504
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	8.4	0.9229
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	10.4	0.9305
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10026020 [exp]	10.4	0.8964
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	11.0	0.9338
AT4G15450			Senescence/dehydration-associa...		Lus10043028 [exp]	11.5	0.8482
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	13.6	0.9226

Compare expression of checked genes

Lus10042105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.