Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26110 241 / 1e-77 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT5G56950 241 / 3e-77 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT2G19480 238 / 5e-76 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT3G13782 201 / 2e-62 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 69 / 3e-13 NRP2 NAP1-related protein 2 (.1) AT1G74560 65 / 5e-12 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001235 [exp] 500 / 3e-180 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042097 [exp] 333 / 2e-112 AT4G26110 232 / 5e-72 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011956 [exp] 236 / 1e-75 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 235 / 3e-75 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 233 / 2e-74 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 219 / 4e-66 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10027615 [exp] 204 / 1e-63 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10001231 [exp] 202 / 8e-63 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) Lus10026197 [exp] 199 / 2e-61 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148600 [exp] 248 / 4e-80 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 243 / 5e-78 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 213 / 1e-66 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 194 / 5e-58 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 199 / 1e-57 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 186 / 5e-55 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 176 / 4e-51 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.017G080700 [exp] 60 / 4e-10 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.015G062700 [exp] 59 / 8e-10 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10042106 pacid=23153889 polypeptide=Lus10042106 locus=Lus10042106.g ID=Lus10042106.BGIv1.0 annot-version=v1.0 ATGGTGGCCGAAGGAGCTCTTAACGAAGATGCTGTCGTCAATCAACTCTCGAAACTCGCGATGAAGCGTCTGGAGGGCTTAGATCCCCAAGTGCGTGACC GGGTGAAGCTTCTGATGGAGATTAAGAGTCGTCACGACGAGTCCGAATCCAAACTTTTCGAGAAGATGACCGCCCTCGAATTCAAGTACCAAAACGTGTA CAAGCCGCTTTACTCCCGACGCTGCGGCATTGTAAACGGTACTGCAGAGGCATCAGCAGCAGGAGTTCCAAAGTTCTGGCTGCTCGCGATGAAGAACAAC GACATCTTATCGAACGAGATAACGCCGAGGGATGAAGGAGCTCTGATGTTTTTGAAGGAGATTAAGTGGAGCAGACTACTTGACGAGAAGAATCAGCCTC ATTCCAACAAGGGATTCAGGCTCGATTTTTACTTCGATCCGAAAACCAACCCTTATTTCGAAAACTGTGTCCTGACCAAGACGTACCACATGGCTTATGA GGCGTCGGATTATAGTGAGCCGCTCGTTGAGAAAGCTGTTGGGACGGAGATCAAGTGGCGTGAAGGGAAGGATTTGACTAAGAAGAAAGGTGAAGTTGTT GAGGACTGTGAGAGCTTCTTCAACTTCTTCAACCCTCCGAGAATCCCTGTGGATTATGAGGAATTGGATGAAGACGGTGCTTATGATCTTCAAACTAAGA TGGAACTAGACTTTGCTTTGGGGTGTACTATTCGGGACAAGATCGTGCCACGTGCTGTGTCCTGGTTCACCGCTGAGGCTGCTGTTTGGGGCGATCACAA GGATGAGGAGAATCATGATAACGAGGATGAGGATGGTAAAGATGAAGAGATTATAAAGGAGTCGACTGAGAGCAAGATAGAAGATCATAAAGAGGATGAG GATAAGGGTAAGAACGAGGAAAATGAGGATGAGGACGAGAACGAAGATGAAGAGAACAATAAATGCTCTTGCTAA
AA sequence Show only first row Show all	>Lus10042106 pacid=23153889 polypeptide=Lus10042106 locus=Lus10042106.g ID=Lus10042106.BGIv1.0 annot-version=v1.0 MVAEGALNEDAVVNQLSKLAMKRLEGLDPQVRDRVKLLMEIKSRHDESESKLFEKMTALEFKYQNVYKPLYSRRCGIVNGTAEASAAGVPKFWLLAMKNN DILSNEITPRDEGALMFLKEIKWSRLLDEKNQPHSNKGFRLDFYFDPKTNPYFENCVLTKTYHMAYEASDYSEPLVEKAVGTEIKWREGKDLTKKKGEVV EDCESFFNFFNPPRIPVDYEELDEDGAYDLQTKMELDFALGCTIRDKIVPRAVSWFTAEAAVWGDHKDEENHDNEDEDGKDEEIIKESTESKIEDHKEDE DKGKNEENEDEDENEDEENNKCSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10003275 [exp]	2.4	0.9336
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	4.2	0.9383
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	5.4	0.8784
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	6.0	0.8946
					Lus10013654 [exp]	6.8	0.9342
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	8.4	0.8712
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	10.9	0.8536
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10036117 [exp]	11.7	0.8479
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	12.7	0.9171
AT3G46140			Protein kinase superfamily pro...		Lus10029018 [exp]	14.7	0.9005

Compare expression of checked genes

Lus10042106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.