Plant FIBer expression Database

Lus10042107 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66540 297 / 7e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001234
[exp]
522 / 0 AT5G66540 332 / 9e-109 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G082600
[exp]
357 / 9e-116 AT5G66540 342 / 8e-112 unknown protein
Potri.015G078500
[exp]
352 / 9e-114 AT5G66540 360 / 8e-119 unknown protein
Potri.003G194550
[exp]
60 / 4e-11 AT5G66540 56 / 2e-10 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04006 Mpp10 Mpp10 protein
Representative CDS sequence
>Lus10042107 pacid=23153891 polypeptide=Lus10042107 locus=Lus10042107.g ID=Lus10042107.BGIv1.0 annot-version=v1.0
ATGGCTGTACCAAACACGTTCATTCTCAATGTGATAGCACTTGTCACGACAACACTAACGTATAACGGCGCCATTGCTACAAATTTAGTTCACCGTATGT
TCTTATTCGACAGGATTTTGATGCTGATGGAAGAATTGGCGCTGCCTGGTGTTCGTAGGTTTCTCGATGCAATGAGATTGCCCATGACCGATTCGATTGT
GAAGAAAGTGGTGGAGCTTGCTGTCCGCATCTCCGAGGAGGGGTGTGATTTCCATACACATGGAGATGTTGGACACCCCTTTCTCACCATCTTTGTCACC
GCTGACCACGGTGAGCGAAGAAGTAGCGAGAATGGAACCGCTGCACCGCCTGAAATTGACGGAGCCACCGCAGTGGCTGGGACAGTCACCGCCGCTTTCG
GTGGGAGCACGGCACCGTCACCGCCGCTTTCGGTGGCAGCACGGGAAGCCTCTAAGCATCTGTTCTCGTCTCTCAGACCTCACGTACGGATATGTCCGTT
CGATCAACTGCTAGTCGATGGATTTGACGCCGAGCAGATTTGGCAGCAGATAGACCTACTCACGCAGCCGCTGGTTCGCAGCATTCGACGACGGGCGAAG
CACTGGGAAAAGAATCCTGAGGAAATTGAGACTTTGCTCCCTGAGGTTGCTGGTGGAGAAAATATGGAGGAAAAGAAAACGGAGCAGCTTGCTGAGGATG
ACGATGAGGATGGTGATATGGATGTTGATGATGATGAGGAGGATGAGGATGAGGCTGGGGAGGGCAGTGCAGAAGAGGAGGAGAAAGTTGGAGGGATAGA
AGATAAGTCTTTCAAGATAAACGAGTTGAAGGAGTATTTGGAAGAGGAAGAAGCTAAGCATTATGGACTCGATCCAAAGAAGAAGAAGTCTAAGGGAAGT
CAAGGCAAGAAATTGATGGGTGAAGATGATGACAGTGAAGATGATGATGAAGAAGATGAGGATGATGAGCTCGATTTATTTGGTGAAGGTGATGACGACG
TTGAAGAAGATGATATGGCAAACGCCAGAGCTGAAGACTTCTTCGCCCCTCAGAAAGGAGTCCCAAACAAGTCCAAGTTTCAGGTGGAAGACACAAGCTC
AGAAGAAGAAGAAGAAGAAGAAGGTTCAAGCTCTGGTGATGAGGACGACGATGAGAAACCAGACGAGAAACGAAAAGTACTTTCCACCCATGAAAAGGAA
CTCCAGAAGAAACAAGCTGAGATAGAGAAAATGGAGAAAGCAAATCTGGATCCAAAACCCTGGACCCTGCAGGGAGAGGTTAAAGCTACAGACAGACCCA
AGAACAGTGCATTAGAAGTTGATTTAGATTTTGAGCATAATGTTGGGCCTGTCCCAGTTATCACTGAGGAGGTTACACAATCTCTAGAGGAGATGATCAA
GAAAAGGATCCTTGAGGGACAATTCAATGACCGTAAAAAGGCTCCTGGTTTGCCCTCCAAAGCACCAAGAGAGTTGAAACAGATGGATGAAAATAAGAGC
AGCAAGGGCCTTGCCGAAGTTTATGAGAACGAATATGTTCAGCAGACAAATCCAGCTGCTGCTCCATTATCTTTCTCAGATGAACAGAAGACGGAGGCAA
GCACCTTGTTCAAGAAACTTCGCTTGAAGTTAGATGCACTCTCCCACTTCCACTTTGCTCCAAAACCTGTGATCGAGGACATGACGATCCAATCAAACGT
CCCTGCTCTTGCAATGGAAGAGATTGCTCCTCTCGCAGTTTCAGATGCTGCTATGCTTGCTCCTGAAGAAGTTTTCGAAGGCAAAGGGAATGTTAAAGCA
GAAGTGGAACTTACGCAAGAAGAAAGGAAGAGAAGAAGGGCTACAAAGAAACGAAAACACAAAGCTAAAATGGCCAGAAAGGCGGAAAGTATAAAGGCAA
GAGAAGATGAGTTGCAAAACCAGAAAGATGGTAAACTTCATTTCGTCCCGAACAAACTCGTTTAG
AA sequence
>Lus10042107 pacid=23153891 polypeptide=Lus10042107 locus=Lus10042107.g ID=Lus10042107.BGIv1.0 annot-version=v1.0
MAVPNTFILNVIALVTTTLTYNGAIATNLVHRMFLFDRILMLMEELALPGVRRFLDAMRLPMTDSIVKKVVELAVRISEEGCDFHTHGDVGHPFLTIFVT
ADHGERRSSENGTAAPPEIDGATAVAGTVTAAFGGSTAPSPPLSVAAREASKHLFSSLRPHVRICPFDQLLVDGFDAEQIWQQIDLLTQPLVRSIRRRAK
HWEKNPEEIETLLPEVAGGENMEEKKTEQLAEDDDEDGDMDVDDDEEDEDEAGEGSAEEEEKVGGIEDKSFKINELKEYLEEEEAKHYGLDPKKKKSKGS
QGKKLMGEDDDSEDDDEEDEDDELDLFGEGDDDVEEDDMANARAEDFFAPQKGVPNKSKFQVEDTSSEEEEEEEGSSSGDEDDDEKPDEKRKVLSTHEKE
LQKKQAEIEKMEKANLDPKPWTLQGEVKATDRPKNSALEVDLDFEHNVGPVPVITEEVTQSLEEMIKKRILEGQFNDRKKAPGLPSKAPRELKQMDENKS
SKGLAEVYENEYVQQTNPAAAPLSFSDEQKTEASTLFKKLRLKLDALSHFHFAPKPVIEDMTIQSNVPALAMEEIAPLAVSDAAMLAPEEVFEGKGNVKA
EVELTQEERKRRRATKKRKHKAKMARKAESIKAREDELQNQKDGKLHFVPNKLV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66540 unknown protein Lus10042107
[exp]
0 1
AT4G18905 Transducin/WD40 repeat-like su... Lus10001126
[exp]
5.7 0.7392
AT2G20490 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST ... Lus10024913
[exp]
6.3 0.7496
AT2G02160 C3HZnF CCCH-type zinc finger family p... Lus10014490
[exp]
9.5 0.7196
AT2G19490 recA DNA recombination family ... Lus10021585
[exp]
13.5 0.7486
AT5G50310 Galactose oxidase/kelch repeat... Lus10040895
[exp]
21.6 0.7324
AT1G56350 Peptide chain release factor 2... Lus10010922
[exp]
22.6 0.6651
AT5G04600 RNA-binding (RRM/RBD/RNP motif... Lus10018666
[exp]
22.8 0.7310
AT1G05730 Eukaryotic protein of unknown ... Lus10025588
[exp]
23.7 0.7055
AT5G13830 FtsJ-like methyltransferase fa... Lus10023402
[exp]
23.9 0.6900
AT2G26470 unknown protein Lus10038230
[exp]
27.5 0.7290

Lus10042107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.