Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48195 656 / 0 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001232 [exp] 1086 / 0 AT3G48195 642 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001233 [exp] 716 / 0 AT3G48195 68 / 6e-12 Phox (PX) domain-containing protein (.1) Lus10012042 [exp] 45 / 0.0005 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10027939 [exp] 45 / 0.0005 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082500 [exp] 913 / 0 AT3G48195 728 / 0.0 Phox (PX) domain-containing protein (.1) Potri.015G078300 [exp] 893 / 0 AT3G48195 778 / 0.0 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain
Representative CDS sequence Show only first row Show all	>Lus10042108 pacid=23153807 polypeptide=Lus10042108 locus=Lus10042108.g ID=Lus10042108.BGIv1.0 annot-version=v1.0 ATGATTAATGGCGAGAGTGTTCCCCTTGCTACGAGTACTGATCGTGATCCTTTCGGTTTATCCGCATCGAAATCAGAAGGGGGTGATGGTTATGGATCAC AGTGTTCGTTGTCGGATTACTCTTCGTGTGGGGAATCGGAGTTTGATCGGTACTGTAGCGCAAACTCGGTGATGGGTACACCCAGCGTTTGTAGCGTGTT TGGACCAGCTGGTGAGTTTCTGGATTCTGAGTTTGGTTCTTCGAGAAGTTTCGAGGATTTTAGTTTGGGAGGGAGGATCGGTAGAAATGTGGAAGGGCGG AAGCTGACTAAGCTTTCAAATTCAGGTGTTGATTGTTTGAACAGGGGAGTTGATGGGGTAGATAACAGTAGAGTGAGTTCTCGGGATGCTGGAAGGATCG TTGGAGAGAGTAGTGGAATGGTTGGTAAATTGGATGGTTGGCTAGATACAATGCAAGTGGGAAATGTGACAGGTAGTAATGATGGGCTTGAAGAGATGTC TTTGGAAGAAGGGATTGTTGAAGAAAAGGAGGGGTTTTCAAGTAAGTTGGACCCGCATATGCTTTCACAGCTTAACACGGAGAAAGTAGGGTTAGAGGTA GAGGAAGATGAGCTCTCATTTAGAAATGGGAATGCCGAGGATGAAGATGATGATTCAATGTATGGCTGTGGTTCAGATGATGAAAACAGGAAGAATTTGT ATATCCAGGGAAAGATAGAGTACAGCAAGAATGTAACACTTGAGAACAACAGTCCGTTACTCATCAATTCACCTGTTGCTTTTGGTTCTAGTGATTTTGA TGATTTTGAGCAAGAAAGTATTGGAAGCAATCTAGCTTCTCTTACCTTGGGTGAGTTTCAGGAATTAGGAACTCAAAGATCGGTTTTCAGCTCTCTGCCC ATTACTAGGCAGCCAGTTGCTTCTGTTGGTTGTTCTTTAGTTCCTACATGTTCTCATGATTTGGAACTGGATCAGTTGGAAGGAGTGAGAGATATTCCTG TCGCCATTTGCCAGCTCAGAGAAGCTGATGGATTGTCCAAGGTTCATAGAAGTACGTCATCGCTTGGGTCTGATCTTTCAAGCCTTTGTGGACTGGACCA AGAAGATGCGACTGACAATTCTCTTTCTTATAACAACGATGGTTCTAAAGTTACAATGGCGCTTTTTAAGAACAGTTCCATCAGTGATATACTTGATTTG GAGCTAGATCCGCTGGGCAGAAAAGATTTTGCAGGGTTAAGACCGGACGTTCTGAGTTCTGATAAACAAATGGAGTCCCGAGGTACTGGAAGTGAGCACA TCAGTTTGATCCAAAGTTACCAAGTCTTGGAGAAGCAAGAGGCTAAGAGTGTAGAAGTAAATGCTGATCCTCCCGTCACTCATCATTCTGGTACAGTGTT CTTTGAAGATCATGAATGGGCACCTGCACATTCAGCACTTCAAGATGAACGTGGTGAAATCAACGAAGTTAACTCAGCTTTGACTGTTACTTTGGAGAAT CATCAAATGACAAAAGAGTCAGGAAATGTTGAACTCAATGAATTTTATGATGAGGTTGTCAATGAAATGGAAGAAATTCTACTTGATTCCAACGAGTCTA CAAGGCCGAAATTCCTCCAGGGTAATCTCAGTTTCCACTCGCAGCCAACTTTGCCTCAAAGAGATGGTGGGAAAACCGCTTCTACTTCTGGATCAGTTGA TACCTATGCATTAACCAAACAGTTGAAAAGAATTGATGGAGCTGATGTGGTAGGTGCAAAACAGAAGAGAGGCGATGTCTCCTTGAGTGAAAGATTGGTT GGAGTTAAAGAATACACAGTCTACACTATAAGAGTGTGGAGTGGTACAGATCAATGGGAGGTTGAACGCAGATATCGAGATTTTTTGAATCTACACCGTC AGCTCAAGTCATTGTCTGCTTATCAAGGGTGGTCTCTTCCTCTGCCCTGGTCGTCCGTCGGAAGGGAGTCCAAAAATTTGCTTGGCAGTGCCTCTCCAGA TGTTGTATCCGAGAGAAGTGTGCTGATTCAGGAGTGCTTACATTCTATTCTGGTGCCTGGACCCTTTTCCAGCCTTCCTAGTGCGTTATTTTGGTTCTTG TGTCCCCACGACTCGTTACCTAGTTCCCCAGTGTCAGAAACACAATCCGCTGGTTCGAGAAGTTTAGGTACTTTTGGGAAGACAATACACCTGATTGTTG AAATTCGGCCTCACAAATCTATGAAACAATTGTTAGAAGCACAACATGAGACTTGTGCTGGATGCTACAAGCATGTTGGTGCTAGTAACACACTTATACA TGATTTCGCCAAGACCCTTGGTTGGGGAAAGCCTCGGCTCTGCGAATACACTGGTCAATTGTTTTGTTCTTCGTGCCATACAAATGATGGTGCAGTTTTG CCAGCACGCGTACTTCATTATTGGGATTTCACCAAATATCCAGTCTCTCAGATGGCCAAGTCATACCTGGATTCCATACACAAGCAGCCAATGCTCTGTG TTGGCGCAGTTAATCCTTTCCTGTCGTCCAAGGTACCAGTAATGCACCATGTTATGAGTGTCAGGAAGAGAATTGGAAGTATGCTTCCTTATCTTCGCTG CCCATTCCGCAGGACTGTAAACAAAGGACTTGGTTCCCGTAGATATCTTCTTGAAAGCACTGATTTTTTTGCCCTCAGAGACCTCATCGATCTATCCAAA GGAGCTTTCGCAGATTGTTTTAATGAATGCCACCACGAAACCGTTTTATACCTTGATGCAGCCCTCCCCGTAATGGTCGAGACAGTTTCCGCCAAAATTC GGGAGCATATAACAGAGCAATGCCTTGTATGCTGTGACGTTGGAATCCCTTGTGGTGCTCGACACGCTTGTGATGATACTTCTTCGCTCATTTTCCCTTT CCAGAGTCGTTCTCTAACCATTTTTAGGACACAGGAATCCGAGATTGAGAGGTGTTCATCCTGTAACTTGGTGATGCATAGATCTTGCTTCAGAAAGCTC CCAACCTGCTCGTGCGAAGCACGTCTAGGAGCGACCGACATCGCCACTTCATCAAATCGATCAACCCAACTTGTCCGTAACGACTCATTAGCAAGATCAA CATCTTTCTCAACAGCTCGATTGCTGTCAGGACTTTTCTCGAAAGGAAAGGAACACAAGACGATCAATCTTAAAAACAGCAGCAATGTCATCCTAATGGG TTCCTTGCCGTCTACAAACACTTTGTAA
AA sequence Show only first row Show all	>Lus10042108 pacid=23153807 polypeptide=Lus10042108 locus=Lus10042108.g ID=Lus10042108.BGIv1.0 annot-version=v1.0 MINGESVPLATSTDRDPFGLSASKSEGGDGYGSQCSLSDYSSCGESEFDRYCSANSVMGTPSVCSVFGPAGEFLDSEFGSSRSFEDFSLGGRIGRNVEGR KLTKLSNSGVDCLNRGVDGVDNSRVSSRDAGRIVGESSGMVGKLDGWLDTMQVGNVTGSNDGLEEMSLEEGIVEEKEGFSSKLDPHMLSQLNTEKVGLEV EEDELSFRNGNAEDEDDDSMYGCGSDDENRKNLYIQGKIEYSKNVTLENNSPLLINSPVAFGSSDFDDFEQESIGSNLASLTLGEFQELGTQRSVFSSLP ITRQPVASVGCSLVPTCSHDLELDQLEGVRDIPVAICQLREADGLSKVHRSTSSLGSDLSSLCGLDQEDATDNSLSYNNDGSKVTMALFKNSSISDILDL ELDPLGRKDFAGLRPDVLSSDKQMESRGTGSEHISLIQSYQVLEKQEAKSVEVNADPPVTHHSGTVFFEDHEWAPAHSALQDERGEINEVNSALTVTLEN HQMTKESGNVELNEFYDEVVNEMEEILLDSNESTRPKFLQGNLSFHSQPTLPQRDGGKTASTSGSVDTYALTKQLKRIDGADVVGAKQKRGDVSLSERLV GVKEYTVYTIRVWSGTDQWEVERRYRDFLNLHRQLKSLSAYQGWSLPLPWSSVGRESKNLLGSASPDVVSERSVLIQECLHSILVPGPFSSLPSALFWFL CPHDSLPSSPVSETQSAGSRSLGTFGKTIHLIVEIRPHKSMKQLLEAQHETCAGCYKHVGASNTLIHDFAKTLGWGKPRLCEYTGQLFCSSCHTNDGAVL PARVLHYWDFTKYPVSQMAKSYLDSIHKQPMLCVGAVNPFLSSKVPVMHHVMSVRKRIGSMLPYLRCPFRRTVNKGLGSRRYLLESTDFFALRDLIDLSK GAFADCFNECHHETVLYLDAALPVMVETVSAKIREHITEQCLVCCDVGIPCGARHACDDTSSLIFPFQSRSLTIFRTQESEIERCSSCNLVMHRSCFRKL PTCSCEARLGATDIATSSNRSTQLVRNDSLARSTSFSTARLLSGLFSKGKEHKTINLKNSSNVILMGSLPSTNTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	3.2	0.8751
AT1G72390			unknown protein		Lus10013169 [exp]	4.7	0.8734
AT4G30790			unknown protein		Lus10007700 [exp]	7.1	0.8288
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	7.3	0.8182
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	10.9	0.8366
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	11.2	0.8255
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	12.0	0.7900
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	12.4	0.8518
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	13.3	0.8193
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	13.6	0.8414

Compare expression of checked genes

Lus10042108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.