Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62960 352 / 7e-121 unknown protein AT1G10660 278 / 4e-92 unknown protein AT3G27770 237 / 4e-76 unknown protein AT2G47115 182 / 3e-55 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002386 [exp] 458 / 1e-163 AT5G62960 320 / 5e-109 unknown protein Lus10027692 [exp] 436 / 1e-154 AT5G62960 355 / 2e-122 unknown protein Lus10039964 [exp] 316 / 1e-104 AT5G62960 247 / 7e-78 unknown protein Lus10014556 [exp] 270 / 1e-88 AT5G62960 305 / 3e-102 unknown protein Lus10029133 [exp] 270 / 8e-88 AT1G10660 338 / 5e-115 unknown protein Lus10032130 [exp] 267 / 1e-87 AT5G62960 303 / 2e-101 unknown protein Lus10038056 [exp] 197 / 7e-61 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 185 / 4e-56 AT1G10660 246 / 3e-80 unknown protein Lus10030895 [exp] 177 / 3e-53 AT1G70505 256 / 6e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078200 [exp] 417 / 1e-146 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 393 / 5e-137 AT5G62960 387 / 1e-134 unknown protein Potri.010G042600 [exp] 328 / 7e-112 AT1G10660 372 / 1e-129 unknown protein Potri.001G347400 [exp] 298 / 5e-100 AT3G27770 314 / 9e-107 unknown protein Potri.002G190200 [exp] 228 / 2e-72 AT2G47115 344 / 1e-118 unknown protein Potri.014G115200 [exp] 223 / 2e-70 AT2G47115 340 / 4e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042109 pacid=23153900 polypeptide=Lus10042109 locus=Lus10042109.g ID=Lus10042109.BGIv1.0 annot-version=v1.0 ATGAGCATGATAGCAGGACCAACAGGGGACACGTGGCACCCGGTGATGACAGGGGACACCACAGCAGCAAATTACTGGGTGAACTGGAGGTTCTTGCTTT GTGCCGTGTGGGTTTTGGTGTCCTTGAACATCGCATTGGTGTTGATATGGAAGAAAGAGCACAACTTTATTCGTCGTCGCCAGGAGGAGGTTGAAGAAGA AGAAGAAAGAAAGGAGGAAGCTTTCCTGTATGATGACCAAGCTTGGATGCCTTCCTTGAAAGGGATCCATCCAGCTTGGCTTCTGGGATTCAGACTCAGT GCCCTTTCAGTCCTCTTGCTTCTCCTCATTGTTTCTGTTCTTGTTGGTGGATCCACCGTTTTTTACTACTATACCCAGTGGACATTTACTTTGGTCACTC TCTATTTTGCTATTGGGAGTTTGCTGTCCATTCGAGGATGCTACAGGTATCACAAAAGAGCTAGTGGGGATAGAGTTGGTGATGCAGAGTTAGATGCAGA ACATGGTGAGAATACTTCCAAGTCAATGAAAGGCTCAATTCCTCCTTCTTACCAAGCTGCAGTTCTGGATCGCCAGCCTGCTGGGAAATTGGTTTATGCC TTTCAGATCATTTTCCAGATGAATGCTGGGGCTGTAATGCTGACAGATTGTGTGTTTTGGCTCATAATCGTTCCATTCCTTGCAATCAAAGATTACCATC TCAATGCACTGATTGTTAGCATGCATTCCATGAATGCAATCTTCTTGCTTGGAGATACTGCCATGAATTGCATGCCATTTCCCTTCTTCAGGATTGCATA TTTCATCCTCTGGACAGTCTTCTATGTGGTGTTCCAGTGGATTCTCCATGCTTCTGTCAAACTATGGTGGCCATATCCATTCCTTGATATTTCATCTCCC TATGTCCCATTATGGTATTTTGCAGCAGCAGTAATGCATATCCCTTGCTATGGTGCGTTTGCTTTCATGGTGAAGCTGAAGAACACATTGTTGACCAGAT GGTTCCCGGATTCATACCGGGGACCGAGCTAG
AA sequence Show only first row Show all	>Lus10042109 pacid=23153900 polypeptide=Lus10042109 locus=Lus10042109.g ID=Lus10042109.BGIv1.0 annot-version=v1.0 MSMIAGPTGDTWHPVMTGDTTAANYWVNWRFLLCAVWVLVSLNIALVLIWKKEHNFIRRRQEEVEEEEERKEEAFLYDDQAWMPSLKGIHPAWLLGFRLS ALSVLLLLLIVSVLVGGSTVFYYYTQWTFTLVTLYFAIGSLLSIRGCYRYHKRASGDRVGDAELDAEHGENTSKSMKGSIPPSYQAAVLDRQPAGKLVYA FQIIFQMNAGAVMLTDCVFWLIIVPFLAIKDYHLNALIVSMHSMNAIFLLGDTAMNCMPFPFFRIAYFILWTVFYVVFQWILHASVKLWWPYPFLDISSP YVPLWYFAAAVMHIPCYGAFAFMVKLKNTLLTRWFPDSYRGPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62960			unknown protein		Lus10042109 [exp]	0	1
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	2.0	0.8638
AT5G62960			unknown protein		Lus10002386 [exp]	3.3	0.8683
AT5G23100			Protein of unknown function, D...		Lus10027241 [exp]	6.8	0.8096
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	8.0	0.8199
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	8.3	0.8626
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10002639 [exp]	11.5	0.8096
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	14.3	0.8393
					Lus10039387 [exp]	17.1	0.8377
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	20.5	0.8329
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	21.6	0.8222

Compare expression of checked genes

Lus10042109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.