Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22220 255 / 4e-88 ATISU1, ISU1 SufE/NifU family protein (.1) AT4G04080 229 / 1e-77 ISU3, ATISU3 ISCU-like 3 (.1) AT3G01020 211 / 1e-70 ISU2, ATISU2 ISCU-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002383 [exp] 301 / 4e-106 AT4G22220 260 / 5e-90 SufE/NifU family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081700 [exp] 265 / 6e-92 AT4G22220 253 / 2e-87 SufE/NifU family protein (.1) Potri.015G077500 [exp] 265 / 7e-92 AT4G22220 248 / 3e-85 SufE/NifU family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0233 [flax] [poplar] SufE_NifU PF01592 [flax] [poplar] NifU_N NifU-like N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042112 pacid=23153655 polypeptide=Lus10042112 locus=Lus10042112.g ID=Lus10042112.BGIv1.0 annot-version=v1.0 ATGCTCAGGCTAGCGACGAACAGGATATTGGGCCGTGCAGCAGCGGCGACGGCTCCGCAGCAGCAATCCCCAGCGGCTATATTTCAGAGGTTCTACCACG AGAATGTCATTGACCACTTCAACAACCCTCGCAACGTCGGTTCCTTCGACAAGAACGATCCAAGCGTCGGCACCGGGCTTGTGGGGGCTCCTGCCTGCGG CGATGTGATGAAGCTGCAGATTAAGGTCGATGAAAAGACGGGAGAGATCGTGGATGCTCGATTCAAGACCTTCGGTTGCGGCTCCGCAATCGCGTCCTCT TCTGTAGCTTCTGAGTGGGTGAAAGGGAAGCAGACGGAGGAGGTCTTGACCATCAAGAATACGCAAATCGCAAAGCATCTGTCTCTACCACCAGTTAAGC TCCACTGCAGCATGCTGGCAGAGGATGCCATCAAGGCTGCCGTGAAGGACTACCAAGCAAAGCGTGCGAAATCAAACGGGAACGAGGCAGCCGATGCACC TCTTCAGGAAGCTGCTAAAGCTTGA
AA sequence Show only first row Show all	>Lus10042112 pacid=23153655 polypeptide=Lus10042112 locus=Lus10042112.g ID=Lus10042112.BGIv1.0 annot-version=v1.0 MLRLATNRILGRAAAATAPQQQSPAAIFQRFYHENVIDHFNNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDEKTGEIVDARFKTFGCGSAIASS SVASEWVKGKQTEEVLTIKNTQIAKHLSLPPVKLHCSMLAEDAIKAAVKDYQAKRAKSNGNEAADAPLQEAAKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	0	1
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10011849 [exp]	3.5	0.8149
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	6.2	0.8314
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	7.4	0.7905
AT1G22850			SNARE associated Golgi protein...		Lus10006162 [exp]	8.7	0.8447
AT2G44870			unknown protein		Lus10020395 [exp]	9.4	0.8035
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	9.5	0.8074
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	9.5	0.8049
AT4G38100			unknown protein		Lus10002647 [exp]	11.5	0.8294
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	13.0	0.7883
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	14.1	0.7654

Compare expression of checked genes

Lus10042112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.