Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48190 117 / 3e-26 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G40340 78 / 2e-14 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 68 / 2e-11 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 60 / 6e-09 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 60 / 7e-09 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 53 / 1e-06 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 47 / 8e-05 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002382 [exp] 1750 / 0 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10032141 [exp] 93 / 9e-19 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 89 / 1e-17 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10012010 [exp] 76 / 1e-13 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10016267 [exp] 75 / 2e-13 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10040367 [exp] 70 / 1e-11 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 67 / 8e-11 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 53 / 2e-06 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 52 / 2e-06 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081500 [exp] 185 / 1e-47 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.004G130600 [exp] 95 / 2e-19 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G044600 [exp] 85 / 3e-16 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 83 / 8e-16 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G131800 [exp] 71 / 3e-12 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 68 / 3e-11 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.005G026800 [exp] 52 / 3e-06 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 48 / 3e-05 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10042113 pacid=23153540 polypeptide=Lus10042113 locus=Lus10042113.g ID=Lus10042113.BGIv1.0 annot-version=v1.0 ATGGAGGATACTAAAACCCTAGAGGCAGAGAACCCAGATGCTAAAACCCTAAAAGATGGGAACTTTGAAGCTATGGAGTTGGATCAATGCTCTGATAAGA AATGTGCTGGTCTAGAGCACGAGTCTGAGATTGTGGTAGAAGATAACGGTCAATTGGTCAACGAGGGAATTGAAAATGGTCAAGATGGGGGCAATGTAGG TTCATTGGTCGAGACCCGAAGGGTTAATGATGCTGTCGGACTTGGGAAGGTCTCTTCGTTAAGTAGTGATGGAAATGGGGAAGCTGAGAGTGAGGAACGT TTAAAGGGGAGGCAATTGCAGGACGAAAAGATTGTGAATTTGGTCGAAGAAGCAGCGGTGGAGAACATGGTTAAAGACATTGATGCTGTCGATACCGAGT CTGAGACTCTGGCAGAAGATAACGGTCAATTGGTCAATGTGAGAATCGAAAATGGTCAGGACGAGGGCAATGCAGGTTCATTGCTGGAGACCCCAATGGT AAATGATGCTGTCGAACTCAGAAAGTTCTCTTCTTTAAGTAATGATGGTAATGGGGAAGCTGAGAGTGAGGAATGTTTAAAGGGGAGAGAAGTGCAGGAC GAAATGTTTGCGAATTTGGTCAAAGAAGCAGCGGTAGAGAACATGGTTACAGACATTGATACTGTCGATACCGATGATCAGGGTATAAATGTTTCAGGAG ATGACATATCACTCTATGTAGAGCTGTCCGGTCCAGTTGATGGAGCTGGCAATGGTGGTGGAGATGACATGGATTGTGTTGATTTGAATAAAAACAAGTC CGGTGAGACAATTGGAAGGAAGTTCTGTCCTGGGGATGTCGTCTGGCTTAGAACAAAAAGTGAGTCATGGTGGCCAGGGCAGGTTTGTGGTCTGTCGACT TGTCCCGAAGATGGTTACAAGGTTAACTGCCATAAAGTTCAGCACTTTGGAAACCAGCATGTTGCTTGGTGCTCACCTTCCATGCTGAGAGATTTCAGCC AGTATTTCGATCAGATAGTAAGAGAAAATAACAAGGGTAAAGGCTTCCTTGGAGTGGTGGAGAAGGCCATCGATGCGTTTGTTAAACGTTTGAAATCGGA GATGACCTGTTCTTGTATGCTCAAGCATGGCTGCTGCAGTGATAAGAACTCAATGGCCATAGTCGAAGAGCGCGATAATAATGATTCACAAGATGGTAAA TCTGTGACGACATTGGGGCGGGGGGCATTTCTTTCTCAGGTTAAACAACTAGCCGTTGCGGTCCGGAAACCTTCACTGCTCGAGTTGGCTGTTGCCAAGA GTCGTGTGGAAGCATTTTCTTGTTCTAAAGGACACCTGCAGCTGCCACTTAGTGAATTGTGGGACCCCGATCAGAAGGGGAATCGAGATCCTACGCGAAA AAGGAAATTGAAACAGTTCTTGAGAGAAGTTCTTAATGATTCGGCAACAGTGAAGGAGGAGGCTGGAAACTCGGATTCTCCAATGGAGGATAAAAGCTTT GACTTGAGAGAAAGAAAGAGGAGCAAGTATTTATCATATCCTTATGTGAATATAGGACAGACGAACAACAAGCCTGCGGGTGAAACGGAACAAGTTAAGG GTAAAGAGCTGGAAGTTCATAAAGGAACTTCTAAATCTTCTGGCAATAAAGGGTTCCGAAAACGCTGGTTCGAAAAGTTCATCGACAACACAGCTGTATC AAGCAAGCCTGAGTTTCTCAGTTCATCCGTTGCTGGTTTGTTGTCCGAGCTGTCTCGTACTTCGGTGGATTGCTTGTATCGAAGCAAGAGCGTGGATTTC GAAGTAGTTGAGTGTTTTTTCTCGAGGTTCAGAATGTCGGCATTTCATGATGAGTCTATTTACGAGAGGCATTGCAAGAACACCATTGGATGTAGTAGTG ATGCTGCTACTGAAGCACCTGAGGAGAAATATGCTGGAGTTGCAAGCCCGGTTTCGAAAACTGCGCAGAAGAAGGTATGGAAGACTAAGCAATCTGGAGG TGATTCAGCTACTACCCCAAAGACCAAACCTGAAAAAGGGTCGTCAGATGGATGTAATGCTGCTGCTGAGCCTGCAAGTCAGGTTTTGCAAACTGCGCCG ATGGTATGGAAGACTAATAAGAAATCTGGAAATTCAGCAGTACGAAAGACCAAACCTGAAAAAGGGTCGTCGCATGGAACACAACCCAAGAATGACAGCA GTATAGACCGATCGACCTCGAAAGTAGCAGGGATGAACGGTAGTCTTGGGTGTAACTCTACAACTCCTCCAAGTGCACAGATTCTGAAACAGATTGCTTC GGAAGTTAAACTGACTCCAATGAAGATACATGACAAAGCAGCGACCTTTCCAGTTATGAATGGAGATCATTCGGAACCCGATACAGTTTGTTCACAAACG TTTTCTCCAACTTCCATCCTTAGAGAAGGCAATATGACAGGCTTAACCGCTGCCATACCAGACACAAACGGTATTGTCTCAACAGATGGTAAGCTGAAGG AGAATGTAACTCCGGGACAGGTGAATCCAGCTCCGGAACAGGCTAATCCTGGTGCTGGAGTTCCGGATGTAAACACAGGAGTTGCTGCTGCTGAAAAAGG CACTTTTTCGACGAATTCTGGGGTGAAGAGGGGAAGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGGGTAGAGGAGAAGGAGGTAATCCAGAGAGACCG AAAAAGAAACCTTCTTTCAGCAATGCAGATTATTATATGGGAAAATGGATGGACATACAAACTTCAGGCACTGTTAAACATCAAACATTTGCTCCGCCAG AAACTCCATCTGATGCGTCTTCTGGGGTTGGGAACTCGAAAGAGTCGGAATCACAGCCATTGCAGCACAACAATGGCTCTGAGAGAACGTGCAATGAGTT TCGGTCAGTTCCAGCTGCCTCAACACCTGAAATAAGGGAAGGTTTAGCACCTAATAATAATGCAGCAGCGGCACCTCCGATGCACATAATAAGGAAGAAT CTTGAGAGGATGACGTCAATGCTGCAGGATGCTGGAGATAGTCTTTCTCCTGAGATGAGGAGCTTGCTGGAAACTGAAATTAACGGCCTCTTGAAAAAGG TGAGCTCTTCTGCTCCCACCAAGCCTTCCTCATAA
AA sequence Show only first row Show all	>Lus10042113 pacid=23153540 polypeptide=Lus10042113 locus=Lus10042113.g ID=Lus10042113.BGIv1.0 annot-version=v1.0 MEDTKTLEAENPDAKTLKDGNFEAMELDQCSDKKCAGLEHESEIVVEDNGQLVNEGIENGQDGGNVGSLVETRRVNDAVGLGKVSSLSSDGNGEAESEER LKGRQLQDEKIVNLVEEAAVENMVKDIDAVDTESETLAEDNGQLVNVRIENGQDEGNAGSLLETPMVNDAVELRKFSSLSNDGNGEAESEECLKGREVQD EMFANLVKEAAVENMVTDIDTVDTDDQGINVSGDDISLYVELSGPVDGAGNGGGDDMDCVDLNKNKSGETIGRKFCPGDVVWLRTKSESWWPGQVCGLST CPEDGYKVNCHKVQHFGNQHVAWCSPSMLRDFSQYFDQIVRENNKGKGFLGVVEKAIDAFVKRLKSEMTCSCMLKHGCCSDKNSMAIVEERDNNDSQDGK SVTTLGRGAFLSQVKQLAVAVRKPSLLELAVAKSRVEAFSCSKGHLQLPLSELWDPDQKGNRDPTRKRKLKQFLREVLNDSATVKEEAGNSDSPMEDKSF DLRERKRSKYLSYPYVNIGQTNNKPAGETEQVKGKELEVHKGTSKSSGNKGFRKRWFEKFIDNTAVSSKPEFLSSSVAGLLSELSRTSVDCLYRSKSVDF EVVECFFSRFRMSAFHDESIYERHCKNTIGCSSDAATEAPEEKYAGVASPVSKTAQKKVWKTKQSGGDSATTPKTKPEKGSSDGCNAAAEPASQVLQTAP MVWKTNKKSGNSAVRKTKPEKGSSHGTQPKNDSSIDRSTSKVAGMNGSLGCNSTTPPSAQILKQIASEVKLTPMKIHDKAATFPVMNGDHSEPDTVCSQT FSPTSILREGNMTGLTAAIPDTNGIVSTDGKLKENVTPGQVNPAPEQANPGAGVPDVNTGVAAAEKGTFSTNSGVKRGRGRGRGRGRGRGRGEGGNPERP KKKPSFSNADYYMGKWMDIQTSGTVKHQTFAPPETPSDASSGVGNSKESESQPLQHNNGSERTCNEFRSVPAASTPEIREGLAPNNNAAAAPPMHIIRKN LERMTSMLQDAGDSLSPEMRSLLETEINGLLKKVSSSAPTKPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	0	1
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	2.4	0.8998
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	3.2	0.8845
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	6.0	0.8844
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	7.3	0.8331
AT3G18310			unknown protein		Lus10025089 [exp]	9.2	0.8219
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	9.6	0.8386
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	10.5	0.8255
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	10.6	0.8783
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	11.0	0.8596
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	11.2	0.8687

Compare expression of checked genes

Lus10042113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.