Plant FIBer expression Database

Lus10042115 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002381
[exp]
219 / 3e-71 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G077100
[exp]
49 / 5e-07 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
Potri.012G081300
[exp]
45 / 7e-06 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
PFAM info
Representative CDS sequence
>Lus10042115 pacid=23154029 polypeptide=Lus10042115 locus=Lus10042115.g ID=Lus10042115.BGIv1.0 annot-version=v1.0
ATGGTGCTTGAGAATCGGGCTCCACCGCTTGATTTTATGGAGGGCAAGTTGGAAGGGTTAGGTGGAGGGCTAAGTGGTAATTATAACTATGACTTCGTCA
TGGGAAATGGCGGTAGTAGTTTCAACGATCATGGAGGAGTTAGTGTAGGCCGCTTAGGAGGAGGAGGAGGAGGGCAAAATGGTCATTTTAATGGATTATC
CTCTAATTTGAGCATTATGGAGAGCTGTCAGAGGTTAATGCTGCCGTACGATGCAAATGAGGATCGTACCATCGGCGATGTGAAGCCTGCAGCCGCCAAG
CGGTTGTCTCTTGACAGCTGGCAAGACCACCATCACCACCACGGAGGCGGCGGCATTAATGTTGTCGGGAAAGAAAGCGGGTTTGGATATTTCAACAACT
CCATGAACAGTACTTTATTAGACCAGTCGTGGATTAACAACGAGGTTAGTACTACTAATCATCATCATCATCATCACGCGATGATGAACGGTGGTTATAA
TGGATCTGGATCCGCCACGTCATCCTCCATACTCCACAATAATTGA
AA sequence
>Lus10042115 pacid=23154029 polypeptide=Lus10042115 locus=Lus10042115.g ID=Lus10042115.BGIv1.0 annot-version=v1.0
MVLENRAPPLDFMEGKLEGLGGGLSGNYNYDFVMGNGGSSFNDHGGVSVGRLGGGGGGQNGHFNGLSSNLSIMESCQRLMLPYDANEDRTIGDVKPAAAK
RLSLDSWQDHHHHHGGGGINVVGKESGFGYFNNSMNSTLLDQSWINNEVSTTNHHHHHHAMMNGGYNGSGSATSSSILHNN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10042115
[exp]
0 1
AT5G62940 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BI... Lus10042114
[exp]
4.6 0.6947
AT2G37590 DOF AtDof2. 4, ATDO... DNA binding with one finger 2.... Lus10040836
[exp]
7.5 0.7133
AT5G62940 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BI... Lus10002381
[exp]
11.5 0.7314
AT5G01910 unknown protein Lus10025214
[exp]
20.5 0.6726
AT5G01880 RING/U-box superfamily protein... Lus10025228
[exp]
22.2 0.6454
AT3G55370 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) Lus10040305
[exp]
25.4 0.6639
AT4G31140 O-Glycosyl hydrolases family 1... Lus10024535
[exp]
28.6 0.6495
AT1G70300 KUP6 K+ uptake permease 6, K+ uptak... Lus10030857
[exp]
34.4 0.6332
AT3G11110 RING/U-box superfamily protein... Lus10040942
[exp]
36.6 0.6235
AT1G71960 ATABCG25, ABCG2... Arabidopsis thaliana ATP-bindi... Lus10006046
[exp]
42.2 0.5417

Lus10042115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.