Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62810 177 / 7e-50 ATPEX14, PED2, PEX14 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002377 [exp] 318 / 1e-106 AT5G62810 199 / 5e-60 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002378 [exp] 285 / 1e-94 AT5G62810 115 / 2e-29 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10027672 [exp] 213 / 3e-63 AT5G62810 381 / 3e-127 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039936 [exp] 196 / 7e-60 AT5G62810 208 / 3e-64 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039935 [exp] 136 / 6e-38 AT5G62810 64 / 2e-12 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G080800 [exp] 213 / 4e-63 AT5G62810 330 / 3e-107 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Potri.015G076100 [exp] 198 / 1e-57 AT5G62810 316 / 4e-102 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04695 [flax] [poplar] Pex14_N Pex14 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042119 pacid=23153834 polypeptide=Lus10042119 locus=Lus10042119.g ID=Lus10042119.BGIv1.0 annot-version=v1.0 ATGCAACCAACAAATGAAGTTAAGCAAGATATGAAACCTGAGATGGCTCCACAAAATCCCAAGTCTGTCTTTGTGAGTTCAGAACCAATACGAGAAGACC AAGTAGAAAATGCTGTGAAATTTCTTTCTCACCCAAAGGTGAGGGATTCTCCAGTTATCCACAGAAGAAATTTTCTTGAGAAGAAGGGACTTACTAAAGA AGAGATAGACGAAGCTTTCCGGCGTGTTCCGGATCCGTCCCCAAGCGCTCAGGCAACTGGTACCAACCAGGCAGAGAAATTTCTTCTAGGGGCAAACAGT TCATTGATGCGATTATTCGTGGTGAAAACAGCTGGCAAGGGAATATCGACCTCAACCATTCAACCAGCAGCTGTCGTGCAAACCCCAACTGTTCCTCCTG GTGGGAGCTCATCAATTGTGACTGTGGCTCGTTCTCGAATTCATTGGTATCATATTGTATCTGCTGTTGGATTGCTGGCAATTTCTGGTGCTGGAACGGC TATATGGGTTAAGAAGTCCATGATTCCACGGCTAAAATCTTGGATACGTAAGGTGGTTCTGGAAGAAAAAGATGCTGATGAGAATAAAACTAGTGGCCGA CCAACATGGGCTGAAGAAGCTGCAGCAGCTGCAAAATCGGCGGCAGCTGCTGCATCTGATGTTGCAAATGCAAGCAAGGAAATGATTATCTTAAGAAATG AAGCAAGATCTTCCTCCCCACCTGCTTACGCACAGCCACCTGTTGCACCTCATCCGAAGTCATATATGGAGGATGTGGATGATCAACCCCCGTACCCTAA CCAGCAATTTTCGAATTCTCGCTCGGTGCCTAGGTCTAAGCCTTGGGAAAGCAGTGAAGCCAAAACCACCGCTAGAGGATACGTCCCTTCAGTCAACGGC GAAGGCTCAGGTTTTGGCGCACCAAGCAATGGAGTGAGCTATCAGCAAGAAAATGAGACCACTGTGCCTTGGTGGCAGAAGAAGAACGCGAGAATCACTG AGCTTGATTACGCGGAAGCCAAGCAAGGGCCTTCTGTTACTCAGACCAGCGAGCAGCCGATTCAGCGTACATGGGTGCCTCCCCAGCCACCTCCCATCGC AATGGCTGAAGCAGCAGAAGCCATTAGACGACCAAAAGCCAAGAAAGAGGCAGTGGTGGAGGATCACTCAGTTTCTCAGTCTCAGCCCGCTGAGGTGACT GATGAGTTGCAGAGGATAACCAAAATATCCGAATCTGGAGGTGAACTCAGTGAAGGACCAGGAATCAACGAAGGATCGTCAGGACTGAACTCGAGTGAGA TTGAGGAAGAACCTACACAGAGCTATTAA
AA sequence Show only first row Show all	>Lus10042119 pacid=23153834 polypeptide=Lus10042119 locus=Lus10042119.g ID=Lus10042119.BGIv1.0 annot-version=v1.0 MQPTNEVKQDMKPEMAPQNPKSVFVSSEPIREDQVENAVKFLSHPKVRDSPVIHRRNFLEKKGLTKEEIDEAFRRVPDPSPSAQATGTNQAEKFLLGANS SLMRLFVVKTAGKGISTSTIQPAAVVQTPTVPPGGSSSIVTVARSRIHWYHIVSAVGLLAISGAGTAIWVKKSMIPRLKSWIRKVVLEEKDADENKTSGR PTWAEEAAAAAKSAAAAASDVANASKEMIILRNEARSSSPPAYAQPPVAPHPKSYMEDVDDQPPYPNQQFSNSRSVPRSKPWESSEAKTTARGYVPSVNG EGSGFGAPSNGVSYQQENETTVPWWQKKNARITELDYAEAKQGPSVTQTSEQPIQRTWVPPQPPPIAMAEAAEAIRRPKAKKEAVVEDHSVSQSQPAEVT DELQRITKISESGGELSEGPGINEGSSGLNSSEIEEEPTQSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10042119 [exp]	0	1
AT5G62910			RING/U-box superfamily protein...		Lus10004246 [exp]	6.6	0.7675
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	13.3	0.7547
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	14.1	0.7540
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	16.9	0.7893
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10020196 [exp]	18.7	0.7735
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	24.2	0.7691
AT5G60610			F-box/RNI-like superfamily pro...		Lus10004718 [exp]	30.3	0.7094
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	36.7	0.7368
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	37.3	0.7612
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	38.1	0.7197

Compare expression of checked genes

Lus10042119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.