Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27500 807 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G27960 769 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10840 683 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G31240 152 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 51 / 2e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 50 / 8e-06 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 45 / 0.0002 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002376 [exp] 1347 / 0 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008786 [exp] 736 / 0 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022231 [exp] 735 / 0 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017304 [exp] 700 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 696 / 0 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033883 [exp] 135 / 9e-33 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 132 / 9e-32 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005905 [exp] 46 / 8e-05 AT5G53080 525 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 45 / 0.0003 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075300 [exp] 998 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 983 / 0 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G094700 [exp] 804 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 718 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 689 / 0 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G100400 [exp] 637 / 0 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 630 / 0 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G222900 [exp] 165 / 6e-43 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 54 / 4e-07 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 47 / 8e-05 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042120 pacid=23153632 polypeptide=Lus10042120 locus=Lus10042120.g ID=Lus10042120.BGIv1.0 annot-version=v1.0 ATGGTGGGAATTGCAATGGAAAGAACCAAGGAGGAAGATGCAGTAGCTGAAATGAATGGAAATGGTGTCCCAGTTAAGGAAACATCTAGCCCTCACAACG CAAGCTTAGATGGTACTGTTAATGGTGTTGTTCATGAAGAAGGTAACGTTCATGAGAGCACTGTTGGTGGTGAATCTGGTGCTGCTGCTGCTCATGAGAC GGTGGTTGACACCTCAATTGAGCAGCTTTATGAGAATGTGTGTGATATGCAAAGTTCAGATCAGTCACCCTCGAGGCATAGTTTTGGATCTTATGGCGCA GAATCGAGGATTGATTCGGAGATACGCCATCTTCTTGGAGGTGAGATGAAGGAGATTGAGATAATGGAAGAGGAGGTTGATAAACCTGAAGACGACTCTC ATATGAATAACTCTTCTTCTCCTAAGATGGGAAGTCCATCCGCTGCTGGTGAGAAGTCAGGGAAAAGCCTTAACTTGGCATTGGACACTGAAGCATCATC AGTGACGAACGCTGTTTCAGAGAGACCTCCTCTAGAAAAAAGGAACGGCAAGCCTGGGAAAAGGTTAGGAGTTGCAGCTTTAAGGAAGAGGAAGAAGTCG TTAGGGAATTCAAAGTTGTCTAATGGAGGTGCTGAGGATTCTTCTGAGCCTGGACTTGATAATCCGGATCTTGGACGGTTTCTGCTTAAGCAAGCAAGGG ATTTGGTTTCTTCAGGGGATAGTTCCCAAAAGGCTCTTGATTTGGCACTTAGAGCGGTAAAAGCATTCGAAAGTTGTGTCTGTGTGAAGCCAAGCCTGGA GTTGGTTATGTCGCTTCATGTTGCAGCTGCAATATACTGCAGCATAGGCCAGTATATTGAAGCAATTCCTGTTCTTGAGCAGTCCATTGAGATTCCAGTA ATTGCACAGGGCCAAGAGCATGCTCTTGCCAAGTTTGCTGGCTACATGCAATTGGGCGATACTTACGCAATGCTAGGGCAGCTCGAGAATTCGACAAAGT GTTACGCGAAAGGATTAGAGATCCAGAAACAAGTTCTGGGAGAGAATGACCCCAGAGTTGGCGAAACTTGTAGGTACTTGGCAGAGGCTCATGCTCAAGC ACTGCAGTTTGACGAGGCTAAGAATCTCTGTCAGATGGCTCTGGACATTCACAGGGAGAATGGAGCTCCCGCATCGCTTGAAGAAGCAGCTGATCGCCGG CTGATGGGATTGATATGCGAGACAAAGGGAGATCATGAAGCTGCTCTTGAGCATCTAGTTTTAGCTAGCATGTCCATGGTGGCTAATGGTCAAGAAGGCG AGGTTGCTATTGTCGATTGTAGCATCGGAGATGCGTACTTATCGTTAACTAGGTACGACGAGGCCATTTTCGCATATCAGAAGGCGCTCACATCTTTGAA GACGAGGAAAGGAGAGAACCATCCGGCTGTAGGGTCGGTTTTCGTGCGCCTGGCTGATTTGTACAATAAAACCGGGAAGTTGAAAGAGGCTAAATCTTAT TGCGAAAATGGGTTACGAATTTACGAGAAGCCTGCACCCGGAATCCCTCCGGAGGAGATTGCGAGTGGTCTTACTGACATTTCTGCCATTTATGAATCCA TGAATGAGCTCGAGCAAGCAATCAAGTTGCTAGAGAAAGCCTTGAAGATGTACAATGATGCTCCTGGCCAGCAAAGCACAGTTGCTGGAATTGAAGCACA AATTGGTGTCCTTTACTATATGATGGGTAATTACTCTGATTCCTACAGTTCCTTCAAGAGTGCAGTTGCGAAACTGAGGACGAATGGAGAGAAGAAATCT GCTTTCTTTGGCATTGCTCTTAATCAGATGGGTCTCACTTGTGTCCAACGGTTCGCCATAAATGAGGCTGTGGAATTGTTCGAGGAAGCTAAGGTTGTTT TGGAACAAGAATGTGGACCGGAGCACCCTGATACCCTTGGAGTCTATAGCAATCTTGCCGGTACCTATGATGCAATGGGGAGGCTGGAGGAAGCTATCAA GGTATTGGAACACGTTGTCCAAGTGCGAGAGGATAAGCTGGGGACAGCAAACCCAGATGTTGTCGATGAGAAGAAGAGGCTAGGGGTGCTGCTGAAAGAA GTAGGCAGAGTAAGGAGCAGGAAAGCTAAGTCTCTAGGGAACCTTCTTGATAATAATACAAACAAAGATGTCATTACCTTAGAGGAAAGGTACCAGGAAT TTTTACACACGGGGATTCTCAAAAAGCTATAG
AA sequence Show only first row Show all	>Lus10042120 pacid=23153632 polypeptide=Lus10042120 locus=Lus10042120.g ID=Lus10042120.BGIv1.0 annot-version=v1.0 MVGIAMERTKEEDAVAEMNGNGVPVKETSSPHNASLDGTVNGVVHEEGNVHESTVGGESGAAAAHETVVDTSIEQLYENVCDMQSSDQSPSRHSFGSYGA ESRIDSEIRHLLGGEMKEIEIMEEEVDKPEDDSHMNNSSSPKMGSPSAAGEKSGKSLNLALDTEASSVTNAVSERPPLEKRNGKPGKRLGVAALRKRKKS LGNSKLSNGGAEDSSEPGLDNPDLGRFLLKQARDLVSSGDSSQKALDLALRAVKAFESCVCVKPSLELVMSLHVAAAIYCSIGQYIEAIPVLEQSIEIPV IAQGQEHALAKFAGYMQLGDTYAMLGQLENSTKCYAKGLEIQKQVLGENDPRVGETCRYLAEAHAQALQFDEAKNLCQMALDIHRENGAPASLEEAADRR LMGLICETKGDHEAALEHLVLASMSMVANGQEGEVAIVDCSIGDAYLSLTRYDEAIFAYQKALTSLKTRKGENHPAVGSVFVRLADLYNKTGKLKEAKSY CENGLRIYEKPAPGIPPEEIASGLTDISAIYESMNELEQAIKLLEKALKMYNDAPGQQSTVAGIEAQIGVLYYMMGNYSDSYSSFKSAVAKLRTNGEKKS AFFGIALNQMGLTCVQRFAINEAVELFEEAKVVLEQECGPEHPDTLGVYSNLAGTYDAMGRLEEAIKVLEHVVQVREDKLGTANPDVVDEKKRLGVLLKE VGRVRSRKAKSLGNLLDNNTNKDVITLEERYQEFLHTGILKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10042120 [exp]	0	1
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	4.0	0.9232
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	12.2	0.9109
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	14.7	0.8907
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	15.2	0.9142
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	15.6	0.9129
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	17.4	0.9165
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10002151 [exp]	20.2	0.8914
AT5G42710			unknown protein		Lus10010807 [exp]	21.8	0.9092
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	23.3	0.8494
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	23.6	0.9003

Compare expression of checked genes

Lus10042120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.