Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32175 344 / 7e-121 PNAS-3 related (.1) AT2G25355 343 / 9e-121 PNAS-3 related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002375 [exp] 488 / 2e-177 AT4G32175 348 / 2e-122 PNAS-3 related (.1) Lus10000238 [exp] 324 / 8e-114 AT4G32175 231 / 8e-78 PNAS-3 related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G080300 [exp] 417 / 6e-150 AT4G32175 382 / 8e-136 PNAS-3 related (.1) Potri.015G075400 [exp] 113 / 2e-31 AT2G25355 106 / 2e-29 PNAS-3 related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042121 pacid=23153961 polypeptide=Lus10042121 locus=Lus10042121.g ID=Lus10042121.BGIv1.0 annot-version=v1.0 ATGGAAACAAAGCCTTCCACCGGGTCGTCGTCGAGCTTCATCGACCAGTTAGTGGTTCCAGGTGATGTTATTCTTGACCTTTCAAACATGGCTGAACAGA CTATAAAGCTCGGCGGCGGCCTCCGCCAGGTTTGTGAGGCCATATCAGTGATCAAAGCTGGGGTGCTGAGGTTCTCCAAGCCAAATAAGTATTGGGTTGA AAGTTCTCAGAAAAGGTATGTGCCGTGTGCTGAGGACTCTGTCCTTGGAGTAGTGGTAGACTCTAAAGCAGACAACTTTCTTGTGGACATAAAAGGACCT TCTTTGGCATATCTACCTGTGCTTGCATTTGAAGGAGGCACCAGAAGGAACATACCCAAGTATGAGGCAGGTACTTTGATTTATGTTCGAGTTGTGAAGG CAAACCCTGGAATGAATCCAGAGCTATCATGCGTTGATGCCACTGGGAAGGCAGCACAATATGGAGCTCTGAAAGAAGGCTTAACGTTTGAGTGTTCAAC TGGTTTATCCAGAATGTTGCTAAGTTCATCAACATGCCCTGTTCTCGAAACTCTTGGAAAGAAACTTCCCTTTGAGATAGCAGTAGGGCTAAATGGCAGA GTGTGGGTGAATGCTGATTCTCCATCCATTGTCGTCGTCGTTTCCAATGCGATCATGAATTCAGAGTCATTGAGTAGGGTGCAACAGAAGATTATGGCGG AGAAGTTGTTGCAGAGGGTTCAGGGTAATGTTCTATTTGATTCTGATTAA
AA sequence Show only first row Show all	>Lus10042121 pacid=23153961 polypeptide=Lus10042121 locus=Lus10042121.g ID=Lus10042121.BGIv1.0 annot-version=v1.0 METKPSTGSSSSFIDQLVVPGDVILDLSNMAEQTIKLGGGLRQVCEAISVIKAGVLRFSKPNKYWVESSQKRYVPCAEDSVLGVVVDSKADNFLVDIKGP SLAYLPVLAFEGGTRRNIPKYEAGTLIYVRVVKANPGMNPELSCVDATGKAAQYGALKEGLTFECSTGLSRMLLSSSTCPVLETLGKKLPFEIAVGLNGR VWVNADSPSIVVVVSNAIMNSESLSRVQQKIMAEKLLQRVQGNVLFDSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	0	1
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	3.2	0.8951
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	8.8	0.8906
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	11.3	0.8914
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	11.4	0.8580
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	12.6	0.8784
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10004784 [exp]	14.9	0.8716
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028312 [exp]	15.1	0.8301
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	18.3	0.8832
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	18.7	0.8815
AT5G26800			unknown protein		Lus10011180 [exp]	20.4	0.8756

Compare expression of checked genes

Lus10042121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.