Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62400 403 / 1e-140 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 306 / 4e-100 Protein kinase superfamily protein (.1) AT4G31170 276 / 7e-90 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 269 / 5e-87 Protein kinase superfamily protein (.1) AT3G46930 249 / 2e-78 Protein kinase superfamily protein (.1) AT4G38470 235 / 4e-72 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 230 / 2e-70 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G40540 222 / 2e-69 Protein kinase superfamily protein (.1) AT3G27560 221 / 5e-69 ATN1 Protein kinase superfamily protein (.1) AT5G50000 220 / 2e-68 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000237 [exp] 517 / 0 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 512 / 0 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020018 [exp] 394 / 4e-136 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 395 / 8e-132 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 305 / 4e-100 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 303 / 2e-99 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10015436 [exp] 302 / 6e-99 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10002373 [exp] 272 / 2e-91 AT1G62400 107 / 3e-28 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 277 / 4e-90 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075200 [exp] 574 / 0 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 563 / 0 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 399 / 1e-138 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 395 / 7e-137 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 333 / 1e-110 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 325 / 1e-107 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 288 / 2e-94 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 287 / 7e-94 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 277 / 4e-90 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 274 / 6e-89 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10042122 pacid=23153813 polypeptide=Lus10042122 locus=Lus10042122.g ID=Lus10042122.BGIv1.0 annot-version=v1.0 ATGAGGAAACTCCACTGGTTCAAGCACCAATCCAATTACAACCAGGAGAAGAAATCATCAGAGGCGGCTGGGAGGACACTATCACTAGGGGAGTACAGGA GGGCAATCTCATGGTCCAAGTATCTAGTCTCATCTGGTGCTGAAATCAAACTGAAAGGGGAAGGAGATCAGGAATGGAGTGCTGATATGTCACAGTTGTT TATAGGCAACAAGTTTGCATCAGGTAAGCACAGCAGGATCTACAGAGGGATTTACAAGCAAAGGGATGTTGCAATCAAGCTCATCAGCCAGCCTCAGGAG GATGAAGATTTGGCTTCTTTTCTTGAGAAACAGTTCTCTTCTGAAGTTGCTTTGCTCTTCCAGTTGTGCCATCATCCCAATATCATCACTAACGCCATGT TGCTCCTTGTAAGAAACCTCGAGTCTGGTTTTCTGACTTCAGCAATTCAGTTTGTTGCAGCTTGTAAGAAACCTCCAGTCTTCTGCATCATAACCGAGTA CTTGGCGGGAGGCTCGTTGAGGAAGTATCTTCATCATCAGGAGCCATACTCCCTTCCGATAAGCCTTGTTCTGAAGCTAGCATTGGACATTGCCCATGGG ATGCAGTACCTTCACTCGCAAGGAATCCTCCACAGGGATCTCAAGTCGGAGAACTTGTTGCTCGACATGGACATGAGTGTTAAGGTGGCTGATTTCGGAA TCTCATGCTTGGAATCCCAGTGCGGTAGCGCCAAAGGATTCACTGGCACGTACCGCTGGATGGCTCCCGAGATGATCAAGGAAAAACATCACACCAAGAA GGTTGACGTCTACAGTTTCGGGATAGTTCTGTGGGAGCTCTTCACTGCCCTGACTCCTTTCGACAACATGACTCCCGAGCAAGCTGCTTTCGCAGTTTGC CAAAAGAACGCAAGACCACCATTGCCAGGAACATGTCCAAGGGCATTTGCGCACCTGATAAACCGATGCTGGTCGAGCAATCCGGGGAAACGACCACATT TTGATGAGATAGTTGCGATTTTGGAGAGCTACTCGGAGTCGTTGAGCCAGAACCCTGATTTTTTCGCGAAATACAAGCCAAAACCTGAACTTGGCAAGTT AGGACGCTTTGCAAATTGCGTTAGGAAGAACTAA
AA sequence Show only first row Show all	>Lus10042122 pacid=23153813 polypeptide=Lus10042122 locus=Lus10042122.g ID=Lus10042122.BGIv1.0 annot-version=v1.0 MRKLHWFKHQSNYNQEKKSSEAAGRTLSLGEYRRAISWSKYLVSSGAEIKLKGEGDQEWSADMSQLFIGNKFASGKHSRIYRGIYKQRDVAIKLISQPQE DEDLASFLEKQFSSEVALLFQLCHHPNIITNAMLLLVRNLESGFLTSAIQFVAACKKPPVFCIITEYLAGGSLRKYLHHQEPYSLPISLVLKLALDIAHG MQYLHSQGILHRDLKSENLLLDMDMSVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELFTALTPFDNMTPEQAAFAVC QKNARPPLPGTCPRAFAHLINRCWSSNPGKRPHFDEIVAILESYSESLSQNPDFFAKYKPKPELGKLGRFANCVRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10042122 [exp]	0	1
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	5.0	0.8318
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	5.5	0.8156
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	8.1	0.8097
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	9.4	0.8029
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008995 [exp]	11.4	0.7952
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	14.1	0.7831
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	14.5	0.7905
					Lus10022823 [exp]	19.8	0.7837
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10011002 [exp]	21.2	0.7099
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	21.3	0.7806

Compare expression of checked genes

Lus10042122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.