Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36330 203 / 5e-64 Uncharacterised protein family (UPF0497) (.1) AT5G62820 165 / 6e-49 Uncharacterised protein family (UPF0497) (.1) AT5G40300 130 / 9e-36 Uncharacterised protein family (UPF0497) (.1) AT4G11655 59 / 4e-10 Uncharacterised protein family (UPF0497) (.1) AT2G38480 55 / 8e-09 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002372 [exp] 449 / 2e-160 AT2G36330 224 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Lus10014537 [exp] 124 / 2e-31 AT3G16180 174 / 4e-49 Major facilitator superfamily protein (.1) Lus10032148 [exp] 68 / 1e-12 AT2G36330 82 / 7e-18 Uncharacterised protein family (UPF0497) (.1) Lus10001266 [exp] 67 / 1e-12 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1) Lus10032147 [exp] 62 / 6e-12 AT2G36330 89 / 2e-22 Uncharacterised protein family (UPF0497) (.1) Lus10012216 [exp] 61 / 1e-10 AT2G38480 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075100 [exp] 233 / 1e-75 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1) Potri.012G079800 [exp] 223 / 1e-71 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 69 / 7e-14 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10042123 pacid=23153552 polypeptide=Lus10042123 locus=Lus10042123.g ID=Lus10042123.BGIv1.0 annot-version=v1.0 ATGGATTCGAGAGCCTCCAACAAATCCAAGCCACGGGTCGACTACCTCAACACCACCACCAACATGAAACGATCTTCCTCCTCCAACTCCAACTCCAATT TCGACTCCCAACAACAGCAACAACAATATCAACACTCTCAGACGGAATCGCCGCACTCGCCTCTCCGATTCCACTCGCCGCTCCGTTCCTTCTCGCCGCT CAACTCGCCGGAGAACCCTTCCGTCGACGACTCCAAGGCTGTTGTCGCCGTCAGTAAGGTCACTCACCATACTACCGCTCCGCCTCCTCCCTCGTCCAAG TCCACGGCGGCCCCGGGGACGGCTGTGAACAGGGTGGTCTGGGAAGAGGTGCCGCAGTCGGCTAGGAAGGTTGAGCCGGAAGGAGGGAGAGCGGAATCCG GAGGAGTGCCGTCCGTACGGCGGAGATCGGGGAAGGAGGAGAAGCTGCGGCTCGCCGAGCTCTGTTTTCGAATTGGCGAGTTGTGTTTATGTTTAATTTC TTTCTCGATTATGGCGGCTAATAAGACTAAAGGATGGAGTGGGGACTCGTTCAACCGGTACAAAGAGTACATATATTGTCTATCTGTCAATGTGATTGGC TGTGCTTATTCTGCACTTCAAGCTTATGATATGGGGTACTATATGGGTACTGGGAAGCATGTCATCCGCAACCACTGGCGTTGGCACATCAACTTCTTCA TTGATCAGGCAAGTTCATCATCCTTACTGATACTGGCTTATCTACTTGTATCCGCATCTTCATCAGCAGCAACCAGAGTGGACGACTGGCAATCGAACTG GGGCAAAGACGAATTCACAGAGATGGCGACTGCTTCAGTAGCAATGTCATTCCTGGCTTTTGGAGCCTTTGCTGTAAGCTCTATCATCTCCGGTTACAAT TTCTGCAACCGTGAATCCATCTGA
AA sequence Show only first row Show all	>Lus10042123 pacid=23153552 polypeptide=Lus10042123 locus=Lus10042123.g ID=Lus10042123.BGIv1.0 annot-version=v1.0 MDSRASNKSKPRVDYLNTTTNMKRSSSSNSNSNFDSQQQQQQYQHSQTESPHSPLRFHSPLRSFSPLNSPENPSVDDSKAVVAVSKVTHHTTAPPPPSSK STAAPGTAVNRVVWEEVPQSARKVEPEGGRAESGGVPSVRRRSGKEEKLRLAELCFRIGELCLCLISFSIMAANKTKGWSGDSFNRYKEYIYCLSVNVIG CAYSALQAYDMGYYMGTGKHVIRNHWRWHINFFIDQASSSSLLILAYLLVSASSSAATRVDDWQSNWGKDEFTEMATASVAMSFLAFGAFAVSSIISGYN FCNRESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	0	1
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	1.0	0.8881
AT5G44005			unknown protein		Lus10003610 [exp]	4.2	0.8350
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	4.6	0.8276
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	5.2	0.7926
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	5.3	0.8236
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	8.1	0.8035
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	8.5	0.7719
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	8.7	0.8041
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	8.9	0.7897
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	10.2	0.7810

Compare expression of checked genes

Lus10042123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.