Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22030 45 / 2e-05 Receptor protein kinase-related (.1) AT3G58310 45 / 2e-05 Domain of unknown function (DUF26) (.1) AT3G22040 45 / 3e-05 Domain of unknown function (DUF26) (.1) AT3G22010 44 / 5e-05 Receptor-like protein kinase-related family protein (.1) AT3G21990 43 / 0.0001 Domain of unknown function (DUF26) (.1) AT4G20670 43 / 0.0002 Domain of unknown function (DUF26) (.1) AT4G05200 43 / 0.0002 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT3G22000 42 / 0.0002 Domain of unknown function (DUF26) (.1) AT5G48540 42 / 0.0002 receptor-like protein kinase-related family protein (.1) AT4G20680 42 / 0.0002 Domain of unknown function (DUF26) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002371 [exp] 205 / 7e-67 AT4G38830 37 / 0.001 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) Lus10007506 [exp] 66 / 4e-13 AT3G22040 39 / 5e-04 Domain of unknown function (DUF26) (.1) Lus10011040 [exp] 65 / 7e-13 AT3G21940 38 / 8e-04 Receptor protein kinase-related (.1) Lus10007505 [exp] 65 / 3e-12 ND 39 / 0.002 Lus10028981 [exp] 53 / 2e-08 ND 35 / 0.007 Lus10007507 [exp] 53 / 2e-08 ND / Lus10005955 [exp] 51 / 5e-08 ND / Lus10007508 [exp] 49 / 1e-07 ND / Lus10015472 [exp] 45 / 6e-06 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023876 [exp] 51 / 5e-07 AT4G23180 489 / 5e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024140 [exp] 50 / 1e-06 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 47 / 8e-06 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024000 [exp] 45 / 4e-05 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 45 / 5e-05 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.017G040132 [exp] 43 / 8e-05 AT3G22060 157 / 7e-48 Receptor-like protein kinase-related family protein (.1) Potri.004G023964 [exp] 44 / 0.0001 AT4G23180 401 / 6e-132 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 44 / 0.0001 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 44 / 0.0001 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.007G120600 [exp] 43 / 0.0001 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10042124 pacid=23153909 polypeptide=Lus10042124 locus=Lus10042124.g ID=Lus10042124.BGIv1.0 annot-version=v1.0 ATGATGATCCTCCTCCTTATGATCAACTGCTTACGTTTACAGCTGAAGGGAGTTGTCGGGGACGAATATTTCGATTGTCGTTGGAATACCACAGCCTTCA ACCCATCTAACTCCCCAATGCTAAAATATTGCACAGTCACCCTCAGTACCCAACTTCGCTCCGGCTATTTCGTGACGTGGCCAACTGAGCGGGACAAGTT AATGTATTGTCCTCAAGAGGGTGGAAAATACCCAGATATGTTCATCTGGGTCACTTGTAGCTCTGCACCCACTACTACTCCGGAAGATTGCCGACAGTGT CTTGCGAGTGCTGAGTCGATGATGAACCAGTGTTGTTCAAACTCGTACGGTGTGTATCTTAACAAGCCCCATTGTACGTATAAGTATGCTCGACGAACGA GAGGATCAAATCAACAAGAAGCAGGACTAGCAAATTTAAAGAAGAAGAAGCAGCAGCAGAAGAAGGTTATGGGTTTTCGTAGCATTGCATTAATTCCCAC AGTAGTCGCAATGCTAATCATCATCACCAACGGCGCCTTGGCAAGTAACGGTGGCAGCGAACATTTTCAAATCCGGTGGAACGTCACAACTTCCAACCCA CGTAAACACCCAAAGCTGAGAGCATGCGTAGACGCCGTGACTCAATTTCTGGAATCGGCTAACTCGACGGCTCTACCTAATCGGGACAGGTTAATACAGT GTCCAGCGGTGGTTAAACGACCGGCTCTCTTCTTTTGGGTCAGCTGTAGACGTGGAATGATCCGCCACGATTGCCAACGGTGTCTTGAGAGTGCTGCCTC GAAGATGAACAAATGTTGTTCAAACTCGTACGGAGTTTACGTTAAAAGCGTGAACTGTGGGGTTAGGTACGAGACCTACCCCTTCCTCATGTGA
AA sequence Show only first row Show all	>Lus10042124 pacid=23153909 polypeptide=Lus10042124 locus=Lus10042124.g ID=Lus10042124.BGIv1.0 annot-version=v1.0 MMILLLMINCLRLQLKGVVGDEYFDCRWNTTAFNPSNSPMLKYCTVTLSTQLRSGYFVTWPTERDKLMYCPQEGGKYPDMFIWVTCSSAPTTTPEDCRQC LASAESMMNQCCSNSYGVYLNKPHCTYKYARRTRGSNQQEAGLANLKKKKQQQKKVMGFRSIALIPTVVAMLIIITNGALASNGGSEHFQIRWNVTTSNP RKHPKLRACVDAVTQFLESANSTALPNRDRLIQCPAVVKRPALFFWVSCRRGMIRHDCQRCLESAASKMNKCCSNSYGVYVKSVNCGVRYETYPFLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	0	1
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019320 [exp]	1.4	0.7401
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	6.3	0.7517
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	8.7	0.7222
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	14.3	0.6349
					Lus10025086 [exp]	22.1	0.7297
AT3G01490			Protein kinase superfamily pro...		Lus10030621 [exp]	33.7	0.5930
AT1G23410			Ribosomal protein S27a / Ubiqu...		Lus10013082 [exp]	36.4	0.6815
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	38.0	0.7067
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	40.0	0.6224
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	41.4	0.6710

Compare expression of checked genes

Lus10042124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.