Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27510 357 / 9e-116 Protein of unknown function (DUF3506) (.1) AT4G33630 229 / 2e-66 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027696 [exp] 562 / 0 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10039967 [exp] 546 / 0 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10002370 [exp] 321 / 1e-105 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1) Lus10007064 [exp] 145 / 1e-36 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10020435 [exp] 144 / 2e-36 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079700 [exp] 481 / 1e-163 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.015G075000 [exp] 474 / 3e-161 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.017G043100 [exp] 252 / 3e-75 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12014 [flax] [poplar] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Lus10042125 pacid=23153658 polypeptide=Lus10042125 locus=Lus10042125.g ID=Lus10042125.BGIv1.0 annot-version=v1.0 ATGGCCGGAGCAAATCTCTGGTTGGTTGGCGGCCAATCCGCAACTACAGCTACTCCATTGAAGTCTCCCTTTTTTTGCCTGGATTCCTCGCCGAAGAAGT CCACCAACAATGATTCTAGCTTCTTATGTATTCTGGGTTGGAATGGTGTTCTTCGTCACTGTAACTCCAAGCCCAAACTCCACAAGACCTTCCTACAATT CCCAAGATGTCGTTGTGGCGGAGATAGTATGAACGCGGAAAACACCAGTAATGCTGATGGTTGCTCTTCTTCTTTGGATTGGGATTGGAACAGATGGAAC TGTCATTTCGCTGAGGTCGATTTAGCTGAGAACTATGCATCTGTTCTCAAGTTTCAACTGGACGAAGCAATTGAAAAGAAAGATTTCCAGGAAGCATCGA AGTTGAAAAAGGATATTGCTGAAGCTACTTCAGTGTGCTGTGTTGGTGAAATCATGTCTGAGCTTGAGAATGCGATTGCTCAAGAGAGATATCTTGATGC TTCAAGACTAGCTAAAGACAGTGGAAGTGGATTGTTAGGATGGTGGGTGGGTCATTCTGCTAATCCCATGGGAAGAATTGTTCATATAACACCTGGAATT GGAAGATATGTTGGCAAGAGTTACACTCCTAGGCAGTTGGTAGAAGCATCTCCCGGCTGTCCATTGTTCGAGATATTTGTGGTCAAGGATGCACTTGAAA GATATATGATCAAAGTAGTATCTGTGCGATCAAAAGCAGGTTCAGAAGGTTATGATATTTCACCGTTTAAAGATGAAGAAGAACCCCAAGCATCACAGTT GGGGACGTCTCAGACAATTGATGAGAAGGGTATAGATATTGAGGGAGCAACTGATGAAGGAATTCAAAGTCTGATGGATTTCTTTAAAGATGAATTTCCA GTTTTGAAAGTGAAAGTGATGGACTTTAATGTTACTAGTGGTGTGTCGGAGAAAAACGATTCTACGGAGCAGTTGATTCAAGATGAGCCTGAAAAGATAA AGTCTAAGGATGATGAAAATATGCCTTCCAAGGTTCATATCCGTATCCCGGCTGAGATTAAAGATGTAGAGAAAGATTCCTTTGCCCTACACATTCCTGG GCAACTTCTAGACACTGAAGATGCTGATACTGAGCAATGGAGGTGGAAACTCGCAGCCTTTACAGCTTCAAGAGTTTATGAACTTCTGTCTTCTAATGAA ACCAAGATAGTTAGGGCTCCCCCTGGGAGTAAGGGTTACACGAACATGCGCGAAATAGTCCAACTTGGTTTTAGTCAGGCTATGAAGAAAAGTAGGTTAT GTGAAGAATATACAAACTTCTCCAGAATTTCGAAAGCTAAGGACAATCTAGACCCATTTGATGGGATATACGTTGGTGAATTCCACCCTCTTGGACTAGA GGTAGTTCAGTTGAGGCGCAAATTTGGTCATTGGGACGAAAACTCGTCAGATGCAGATTTCTGCGAGTATGTTGAAGCTGTAAAGCTGACCGGGGATGTC AATGTTCCTGCTGGCCAGGTAGCATTTCGTGCCAGAATAGGGAGCACCAACCTCAGAAAGTATCGTGCTCGTTGGATACCTGCAGGGGTTGAGAGTTACT CAGGTGAAGGAAGAAAAGCAAACATTGGGTTCAAAAACCCGAAATGGGTCGAAGGGGAACTTCTCATACTGAATGGAAAAGTGAATAAGGTTGATACTTG A
AA sequence Show only first row Show all	>Lus10042125 pacid=23153658 polypeptide=Lus10042125 locus=Lus10042125.g ID=Lus10042125.BGIv1.0 annot-version=v1.0 MAGANLWLVGGQSATTATPLKSPFFCLDSSPKKSTNNDSSFLCILGWNGVLRHCNSKPKLHKTFLQFPRCRCGGDSMNAENTSNADGCSSSLDWDWNRWN CHFAEVDLAENYASVLKFQLDEAIEKKDFQEASKLKKDIAEATSVCCVGEIMSELENAIAQERYLDASRLAKDSGSGLLGWWVGHSANPMGRIVHITPGI GRYVGKSYTPRQLVEASPGCPLFEIFVVKDALERYMIKVVSVRSKAGSEGYDISPFKDEEEPQASQLGTSQTIDEKGIDIEGATDEGIQSLMDFFKDEFP VLKVKVMDFNVTSGVSEKNDSTEQLIQDEPEKIKSKDDENMPSKVHIRIPAEIKDVEKDSFALHIPGQLLDTEDADTEQWRWKLAAFTASRVYELLSSNE TKIVRAPPGSKGYTNMREIVQLGFSQAMKKSRLCEEYTNFSRISKAKDNLDPFDGIYVGEFHPLGLEVVQLRRKFGHWDENSSDADFCEYVEAVKLTGDV NVPAGQVAFRARIGSTNLRKYRARWIPAGVESYSGEGRKANIGFKNPKWVEGELLILNGKVNKVDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	0	1
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10036477 [exp]	2.4	0.8714
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	2.8	0.8384
AT1G78230			Outer arm dynein light chain 1...		Lus10020932 [exp]	5.7	0.7805
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	6.2	0.8536
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	8.8	0.8060
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	8.9	0.8375
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	9.8	0.8281
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	14.7	0.7979
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034418 [exp]	15.9	0.7948
					Lus10006129 [exp]	18.9	0.8299

Compare expression of checked genes

Lus10042125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.