Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47990 395 / 1e-137 SIS3 SUGAR-INSENSITIVE 3 (.1) AT5G66070 71 / 6e-14 RING/U-box superfamily protein (.1.2) AT4G11680 69 / 9e-13 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G20823 66 / 2e-12 RING/U-box superfamily protein (.1) AT2G17730 66 / 4e-12 NIP2 NEP-interacting protein 2 (.1.2) AT5G57750 65 / 4e-12 RING/U-box superfamily protein (.1) AT1G60360 66 / 9e-12 RING/U-box superfamily protein (.1) AT3G18930 66 / 1e-11 RING/U-box superfamily protein (.1.2) AT2G17450 63 / 2e-11 RHA3A RING-H2 finger A3A (.1) AT1G12760 64 / 3e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002369 [exp] 402 / 2e-142 AT3G47990 252 / 1e-83 SUGAR-INSENSITIVE 3 (.1) Lus10025612 [exp] 69 / 1e-12 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 68 / 2e-12 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10042443 [exp] 67 / 9e-12 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 66 / 2e-11 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10033425 [exp] 63 / 2e-11 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1) Lus10025162 [exp] 62 / 3e-11 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1) Lus10016163 [exp] 62 / 4e-11 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10023086 [exp] 64 / 6e-11 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079600 [exp] 439 / 1e-154 AT3G47990 533 / 0.0 SUGAR-INSENSITIVE 3 (.1) Potri.015G074900 [exp] 429 / 1e-150 AT3G47990 506 / 0.0 SUGAR-INSENSITIVE 3 (.1) Potri.004G122000 [exp] 70 / 2e-14 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 71 / 3e-14 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 69 / 9e-13 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 69 / 1e-12 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 67 / 2e-12 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 64 / 3e-12 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 66 / 8e-12 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 66 / 8e-12 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042126 pacid=23153749 polypeptide=Lus10042126 locus=Lus10042126.g ID=Lus10042126.BGIv1.0 annot-version=v1.0 ATGGTTCGTTTTGATAGAGTAATTGTTGCAATCAATTGGAAGCGCTATCATTTCTGTACGCACCCTCTGCACATATGGATTGTGGTCGATTACACTACTG TGTTCTTTTTCCGCCTGTTGATGTTCATAGATAATGGACTATCTGCTGGTCTGGGATTAGTTCATTTCGAGGGATTTTGGATGGCAGCAGAGGTATGGCC GGTTTTGTGGAAGGGTAGTGGTAATTTCAATTTTGTCTCTGCTGCTTTATCCATTTCTTTGGGGATGGACTGTAATTGGAACACTCTGTTGCCAGAACAA GGTCAAAAATGGGGTTTCTTTATTTGGTTGCTTTTCAGCTACTGTGTACTCGTGTGTATTGCTATAATGTGTCTTCAAAAGTGGTACGCTCGAAGAGAAG CACTTGTTGCACGTGCACAGCATGGAGTTCCGATTTCTGAATATGGGGTTTTGGTTGATATGATCCTTGTACCGGATTGGGCATTTGAAGCTGCTGGTCA AGAAATGCGAGTCATGGGTCAAGATACCAATGCATATCACCCGGGACTTTATTTGACCGCTACTCAGAGAGAAGCTGTTGAGGCACTGATTCAGGAACTA CCAAAGTTCAGGCTGAAAGCTGTTCCAACAGATTGCAGCGAATGTCCTATCTGCTTAGAAGAGTTTCATGTTGGCAATGAGGTTCGTGGATTGCCCTGCG CGCATAATTTCCACGTAGAGTGCATTGATGAGTGGCTCCGATTGAATGTGAAATGTCCAAGATGCCGCTGCTCTGTGTTCCCGAACCTTGACCTCAGTGC TTTGTCGAATATCCGCTCCGATACAGATAGACCTTCGACAACTGTTGTGTCGACCACCCGTTACATGAGATCCCAACCTGCAAGCGAAAGCTACCGGCTG CGTTTACAAGGGTTCCTTAGGCCAGTCCGCAGTGGGAATGCTGGACCTCTAACCTCAACTGAATCAGGCAGTAGCTCAGGGACTGCAGAGAATCGGAATG TAGCAGTAGCTATGGATGAACCAGCGACGAGAGAACCAGTGATACTGGCTGGACTTGATGATCCTGTTGGTCAACCGATCCCAGATCACCCCTAA
AA sequence Show only first row Show all	>Lus10042126 pacid=23153749 polypeptide=Lus10042126 locus=Lus10042126.g ID=Lus10042126.BGIv1.0 annot-version=v1.0 MVRFDRVIVAINWKRYHFCTHPLHIWIVVDYTTVFFFRLLMFIDNGLSAGLGLVHFEGFWMAAEVWPVLWKGSGNFNFVSAALSISLGMDCNWNTLLPEQ GQKWGFFIWLLFSYCVLVCIAIMCLQKWYARREALVARAQHGVPISEYGVLVDMILVPDWAFEAAGQEMRVMGQDTNAYHPGLYLTATQREAVEALIQEL PKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNIRSDTDRPSTTVVSTTRYMRSQPASESYRL RLQGFLRPVRSGNAGPLTSTESGSSSGTAENRNVAVAMDEPATREPVILAGLDDPVGQPIPDHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	1.4	0.8917
AT1G67170			unknown protein		Lus10015495 [exp]	1.7	0.8920
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10020054 [exp]	2.4	0.8908
AT1G48320			Thioesterase superfamily prote...		Lus10011142 [exp]	7.2	0.8502
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	11.0	0.8896
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	12.7	0.8724
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	14.3	0.8801
AT3G12350			F-box family protein (.1.2)		Lus10007749 [exp]	14.8	0.8428
AT1G67170			unknown protein		Lus10019966 [exp]	15.7	0.8630
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010764 [exp]	16.7	0.8771

Compare expression of checked genes

Lus10042126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.