Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 316 / 1e-103 ATPAO1, APAO polyamine oxidase 1 (.1) AT2G43020 111 / 2e-26 ATPAO2 polyamine oxidase 2 (.1) AT1G65840 101 / 4e-23 ATPAO4 polyamine oxidase 4 (.1) AT4G29720 98 / 1e-21 ATPAO5 polyamine oxidase 5 (.1) AT3G59050 96 / 3e-21 ATPAO3 polyamine oxidase 3 (.1) AT3G10390 91 / 3e-19 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G16310 91 / 5e-19 LDL3 LSD1-like 3 (.1) AT1G62830 89 / 1e-18 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G13682 72 / 4e-13 LDL2 LSD1-like2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019725 [exp] 421 / 3e-144 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10042168 [exp] 420 / 4e-144 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10041898 [exp] 412 / 3e-138 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10039599 [exp] 310 / 9e-101 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 228 / 1e-69 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10004260 [exp] 117 / 3e-29 AT5G13700 99 / 5e-23 polyamine oxidase 1 (.1) Lus10020726 [exp] 97 / 2e-21 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 96 / 7e-21 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10033928 [exp] 87 / 8e-18 AT4G16310 1391 / 0.0 LSD1-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079500 [exp] 513 / 0 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.015G074600 [exp] 478 / 8e-167 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.009G058200 [exp] 329 / 3e-108 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 328 / 4e-108 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.002G055300 [exp] 103 / 9e-24 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.017G144001 [exp] 103 / 1e-23 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 102 / 3e-23 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 100 / 1e-22 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.005G235400 [exp] 91 / 3e-19 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 89 / 2e-18 AT4G16310 1504 / 0.0 LSD1-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10042127 pacid=23153667 polypeptide=Lus10042127 locus=Lus10042127.g ID=Lus10042127.BGIv1.0 annot-version=v1.0 ATGACGTCGAACACACCTCCTCCCCCTACCGTCGACGTCCTCATCATCGGAGCCGGCCTCTCAGGAATTTCAGCGGGGAAAACGTTACAGGAGGCTGGAA TCAGCAACATTATGATGCTCGAAGCTGACAGCCAGATCGGCGGCCGAATCCGGACGGCGGAATTGGGAGGGCACATAGTTGAAATGGGGGCCAATTGGCT CTTCGGAGGAGGTCCAAAGTCCAGCCGCCTCTTCGAAATCGCTAACAGCATCGGCCTTAACTCTCGCTTCTCCGATTTCAATCACCTCTCCTCCAACGCC TACAAGCAAGACGGCGGCTTGTACTCGAAGCAGGATGTGGAAGAGGCGCTCGAAGCGGCGGAAGCGAGGATGGAATTCTGCACTCGGTTATCGTCGTCGT CCACTGTCTTGGGTTCTGCCGATGACGACGAAGGCGGCAGCGACGTCTCCATTTCGGCGGCGCAGCAGCTCGGCAAACAGGTGCCAAAGACACCACTCGA AATGGTGATCGACTATTTCCAGAACGATTACGAGGAAGGGGAGCCACCAACGGTGACAAGCCTAAAGAACACAATCCCCCGGCAGGAATACATGGACTTC GGCCACAAAACTTACTTCGTCGCCGATCCCAGAGGCTTTCACAGCATTGTCCACCACATCGCCAAGCAGTTCTTGTCCCACCACCACCGCCCATCTTCAA CTCATGCTACTAGTCAACTCACCATTGATGACCCCAGGCTCAAGCTTAACCAAGTCGTGAGAGAGATCAATTACTGCGAAAATGGAGTCAGAGTGAAAAC AGAGGATGGCTCCGAGTATCACGCTAAGTACGCAATTGTATCAGTCAGCATTGGAGTTCTTCAGAGTAACTTAATACAGTTTACACCTAACCTACCAGAG TGGAAAGCACAAGCGGTGAAAGAATTCGACATGGGAACTTTCACAAAGATATTCCTGAGATTCCCTCACAAGTTCTGGCCGTCGGATCCTGGAACGGAGT TCTTCCTGTACGCGCACGAAAGGAGAGGGTACTATCCCATATGGCATCACTTGGAGCACGTGATGCCTGGATCGAACATCTTGTTCGTGGCGGTGACTGG CGAGGAATCGAGAAGGATCCACAAGCTCACGTACGAGGACATCAAAGAAGAAGTGATGGGTGTACTCAGGAAAATGTTTGGGAGTGAGATTCCTAATCCT GAACAGTTGCTGGTGCCTCGATGGCTGTCGAATCGGTTCTTCAGAGGAAGCTACTCTAACTGGCCCCCTGGGTATACAACTAGCAGCCACAAGAAACTGA GGGTATGTTCGACTTCTCAGAAGCACCGGAACTGA
AA sequence Show only first row Show all	>Lus10042127 pacid=23153667 polypeptide=Lus10042127 locus=Lus10042127.g ID=Lus10042127.BGIv1.0 annot-version=v1.0 MTSNTPPPPTVDVLIIGAGLSGISAGKTLQEAGISNIMMLEADSQIGGRIRTAELGGHIVEMGANWLFGGGPKSSRLFEIANSIGLNSRFSDFNHLSSNA YKQDGGLYSKQDVEEALEAAEARMEFCTRLSSSSTVLGSADDDEGGSDVSISAAQQLGKQVPKTPLEMVIDYFQNDYEEGEPPTVTSLKNTIPRQEYMDF GHKTYFVADPRGFHSIVHHIAKQFLSHHHRPSSTHATSQLTIDDPRLKLNQVVREINYCENGVRVKTEDGSEYHAKYAIVSVSIGVLQSNLIQFTPNLPE WKAQAVKEFDMGTFTKIFLRFPHKFWPSDPGTEFFLYAHERRGYYPIWHHLEHVMPGSNILFVAVTGEESRRIHKLTYEDIKEEVMGVLRKMFGSEIPNP EQLLVPRWLSNRFFRGSYSNWPPGYTTSSHKKLRVCSTSQKHRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	1.0	0.8182
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002914 [exp]	3.9	0.7989
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	6.0	0.8083
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	6.5	0.8101
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	16.5	0.8115
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	27.1	0.7588
					Lus10023285 [exp]	30.3	0.7542
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	34.2	0.7798
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	39.1	0.7471
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	41.0	0.7798

Compare expression of checked genes

Lus10042127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.