Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10586 82 / 1e-19 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G20970 82 / 1e-19 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10585 71 / 1e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011172 [exp] 89 / 2e-22 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 56 / 1e-09 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 47 / 1e-06 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 42 / 7e-05 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079100 [exp] 160 / 3e-50 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G074500 [exp] 157 / 3e-49 AT4G20970 117 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 100 / 2e-26 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 90 / 9e-23 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G034700 [exp] 89 / 3e-22 AT4G20970 104 / 5e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G129800 [exp] 86 / 6e-21 AT4G20970 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 86 / 9e-21 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099400 [exp] 80 / 1e-18 AT4G20970 85 / 2e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099300 [exp] 75 / 6e-17 AT4G20970 65 / 4e-13 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 44 / 3e-05 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042128 pacid=23153690 polypeptide=Lus10042128 locus=Lus10042128.g ID=Lus10042128.BGIv1.0 annot-version=v1.0 ATGAACAAGTTGCAGTGTCAAGTGGTGGATAGGAAAACTGTGGAGAAGAACCGCAGGATCCTAATGAAAGGCTTGTGCCTCAAACTCGTTTCCCTCCTCC CTCCTACTTACTTCAAAACTTCTCACAAGCACTTGTTGTCGCAACCGGATCAAGTGGACCACGCAGTGTCATACATAACGCAGCTAAGCCAGCGGATCGA GAAGCTAAAGCAGAAGAAGGAAGAGCTAGCAGCAGCAACGAGCAGTCGAGATCATCGAGCTCGAATCGATGATCGCGATCAAGGTCCTAGAAAGGTGGTG GTTGAGGTGCGGGAGTCGGGATCAAGCATAGAGGTGACTCTGATAAGTGGTGTGCAGAAGAGCTTCATGTTGCATGAAGTTTTAAGTATCGTCGAGCAAG AAGGTGGTGAAGTTGTCAGCGTCAACTTGTCAACCGTCGGCGGTAAAACCTTCCACACAATCCATGCTCGAGTCAAGATTTGCAGAGTTGGCGTGGAGAC TTCAAGGATGCGCCAAAGGTTACAAGATACCGTTTACTTTTAG
AA sequence Show only first row Show all	>Lus10042128 pacid=23153690 polypeptide=Lus10042128 locus=Lus10042128.g ID=Lus10042128.BGIv1.0 annot-version=v1.0 MNKLQCQVVDRKTVEKNRRILMKGLCLKLVSLLPPTYFKTSHKHLLSQPDQVDHAVSYITQLSQRIEKLKQKKEELAAATSSRDHRARIDDRDQGPRKVV VEVRESGSSIEVTLISGVQKSFMLHEVLSIVEQEGGEVVSVNLSTVGGKTFHTIHARVKICRVGVETSRMRQRLQDTVYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Lus10042128 [exp]	0	1
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10042254 [exp]	7.7	0.7087
					Lus10011962 [exp]	11.0	0.7087
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	13.4	0.7087
					Lus10022805 [exp]	15.5	0.7087
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	17.3	0.7087
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	19.0	0.7087
AT2G37500			arginine biosynthesis protein ...		Lus10023756 [exp]	20.4	0.6016
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	20.5	0.7087
					Lus10030558 [exp]	21.9	0.7087
AT2G14378			Protein of unknown function (D...		Lus10034455 [exp]	23.2	0.7087

Compare expression of checked genes

Lus10042128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.