Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50000 647 / 0 Protein kinase superfamily protein (.1) AT3G01490 630 / 0 Protein kinase superfamily protein (.1) AT3G22750 531 / 0 Protein kinase superfamily protein (.1) AT4G14780 502 / 4e-179 Protein kinase superfamily protein (.1) AT3G63260 480 / 7e-170 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 236 / 3e-74 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 223 / 6e-69 Protein kinase superfamily protein (.1) AT1G62400 218 / 7e-68 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G17700 219 / 5e-66 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G58950 213 / 6e-64 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002368 [exp] 775 / 0 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 616 / 0 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 515 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 514 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 503 / 6e-179 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 454 / 4e-160 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 272 / 3e-88 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 241 / 2e-76 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 223 / 9e-69 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079000 [exp] 659 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 659 / 0 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 631 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 616 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 530 / 0 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 525 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 521 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 520 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 230 / 8e-72 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 229 / 2e-71 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10042129 pacid=23153790 polypeptide=Lus10042129 locus=Lus10042129.g ID=Lus10042129.BGIv1.0 annot-version=v1.0 ATGAAAGAGACCAGTGACGGGTTCGTGAGAGCAGATCAGATTGATCTGAAGAGCCTCGATGAGCAACTCGAGCGCCATCTCAGCAGGGTTCGAACCATGG AGAAGAACAACAGCAACAGCAACAAGCGATCTAATTCGGATGATTCCAATCATCCTCTTACTACTACTACTTCTCTCCACGGTTCCAGACCCACCGGAAC CGCGGCTGCCGCCATGTCTAAGGAGCGTCGGGAGTGGGAGATCGATCCTTCTAAGCTCCTCATCAAGGGTGTCATTGGTCGTGGCACCTTTGGCACTATT CACCGTGGCTTCTACGATTCTCTCGATGTGGCTGTTAAGCTGCTTGACTGGGGTGAAGAAGGACATAGGACAGATGCTGAGATTGCTGCACTCAGAGCTG ATTTCACTCAAGAAGTTGCTGTCTGGCATAAGCTTGATCATCCTAATGTAACTAAGTTCATAGGTGCAACGAATGGCTCTGCGGACTTACAGATACAAAC CGAGAATGGTCAGATCAGCATGCCTAAAAACATATGCTGTGTAGTTGTTGAATATCTTCCAGGAGGTGCGCTGAAAAATTACCTTATAAAGAACCGCAGA CGGAAGCTAGCTTTCAAAGTAGTTGTTCAGCTGGCGCTCGATATGGCTAGAGGGTTAAGTTATCTTCACTCCCAGAAGGTAGTTCACAGAGATGTAAAGA CTGAAAACATGTTATTGGACAAGACACGCACCGTGAAGATTGCAGACTTTGGGGTAGCTCGTGTCGAGGCTTCGAACCCTAATGACATGACTGGAGAGAC GGGGACACTCGGCTATATGGCTCCTGAGGTCCTAAATGGAGATCCTTACAACCGGAAATGTGATGTCTATAGTTTTGGCATCTGTTTGTGGGAGATTTAT TGCTGCGACATGCCATACCCGGATCTTAGTTTCTCAGAAGTGACTTCAGCAGTTGTTCGTCAGAATCTTAGACCGGAGATACCAAGATGTTGCCCAAGCG CTCTAGCAAACGTAATGAAGCGGTGTTGGGATGCTAACCCTGACAAGAGGCCTGAGATGGATGAGGTTGTATCGTTGTTGGAGGCTATCGACACAACAAA AGGAGGCGGCATGATCCCCCCGGATCAACAAGGTGGATGTCTTTGCTTCCGCAGGACCCGAGGACCATGA
AA sequence Show only first row Show all	>Lus10042129 pacid=23153790 polypeptide=Lus10042129 locus=Lus10042129.g ID=Lus10042129.BGIv1.0 annot-version=v1.0 MKETSDGFVRADQIDLKSLDEQLERHLSRVRTMEKNNSNSNKRSNSDDSNHPLTTTTSLHGSRPTGTAAAAMSKERREWEIDPSKLLIKGVIGRGTFGTI HRGFYDSLDVAVKLLDWGEEGHRTDAEIAALRADFTQEVAVWHKLDHPNVTKFIGATNGSADLQIQTENGQISMPKNICCVVVEYLPGGALKNYLIKNRR RKLAFKVVVQLALDMARGLSYLHSQKVVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGDPYNRKCDVYSFGICLWEIY CCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSALANVMKRCWDANPDKRPEMDEVVSLLEAIDTTKGGGMIPPDQQGGCLCFRRTRGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50000			Protein kinase superfamily pro...		Lus10042129 [exp]	0	1
AT1G14950			Polyketide cyclase/dehydrase a...		Lus10033397 [exp]	3.7	0.8548
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	3.9	0.8805
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	7.3	0.8617
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	7.5	0.8529
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	9.8	0.8349
AT5G66440			unknown protein		Lus10041775 [exp]	12.2	0.8661
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	15.7	0.8609
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	19.5	0.8592
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	20.4	0.8221
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	21.0	0.8202

Compare expression of checked genes

Lus10042129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.