Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 680 / 0 MATE efflux family protein (.1) AT1G12950 532 / 0 RSH2 root hair specific 2 (.1) AT3G26590 524 / 0 MATE efflux family protein (.1) AT5G38030 521 / 0 MATE efflux family protein (.1) AT1G23300 496 / 8e-173 MATE efflux family protein (.1) AT4G00350 470 / 3e-162 MATE efflux family protein (.1) AT4G25640 442 / 3e-152 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT3G21690 431 / 1e-147 MATE efflux family protein (.1) AT1G11670 430 / 5e-147 MATE efflux family protein (.1) AT1G61890 429 / 9e-147 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010035 [exp] 757 / 0 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 521 / 0 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 521 / 0 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 498 / 9e-174 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 489 / 3e-170 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 484 / 1e-168 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 482 / 1e-167 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 476 / 3e-165 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 475 / 5e-165 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 540 / 0 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 533 / 0 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 459 / 1e-158 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 454 / 1e-156 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002800 [exp] 448 / 3e-154 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 445 / 4e-153 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 444 / 1e-152 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 441 / 1e-151 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 440 / 4e-151 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 440 / 8e-151 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10042130 pacid=23153882 polypeptide=Lus10042130 locus=Lus10042130.g ID=Lus10042130.BGIv1.0 annot-version=v1.0 ATGGAGTCGCCGCTGCTCCTGCAGGATGAAGAAGCACCAAACAGAAAACTACTATCCGATTCTTCCTCCGTCGTACGGAAGTTCGGAAATGAGTCGAGGT TGCTATGGAAGATTGCAGGTCCTGCTATCTTCACCGCCGTTTCACAGTACTCTTTGGGCGCCCTGACGCAGACTTTCGTCGGATTCGTCGGAGAGCTTGA GCTGGCAGCGGTCTCGGTGGAGAACTCTGTCGTCGCCGGCCTCGCCTTTGGCGTCATGCTGGGGATGGGGAGTGCACTGGAAACGCTTTGTGGTCAAGCG TATGGAGCTGGAGAGATAAGAATGTTGGGGATATACATGCAGAGATCTTGGGTTATTCTCTTAGCCACAGCTTGTCTATTGGTCCCTGTTTACATCTGGT CTCCTCCGATTCTCAGTTTCTTCGGTGAAACTGCTCAGATTTCGAATGCCGCAGGGGAATTCGCGATATGGATGCTGCCGCAGTTATTTGCGTACGCATT AAACTTCCCGATCCAGAAGTTCCTGCAAGCGCAGAGCAAAGTGCAGGTAATGGCGTGGATATCAGCAATCGTGCTACTCCTCCACGCATTCTTCAGTTGG CTGCTAATCCTGAAGCTTGAGTGGGGGTTAGTGGGAGCAGCAATAGTACTGAATGCCTCCTGGTGGATCATAATCGTCGCCCAACTTGGTTACATTTTCG TAACCAAGTCCGACGGTGCCTGGAATGGCTTCTCTTGGCTCGCATTCTCAAACCTCTGGGGATTCATCAAGCTCTCTCTCGCCTCTGCCGTCATGTTATG CTTGGAGTTTTGGTACTTCATGGTGTTGGTGGTTATAACGGGCCGATTGCCGAATCCTCTGATCCCTGTCGACGCAATCTCAATCTGTATGAACTTAAAT GGATGGGACGCCATGATTGCTATTGGATTCAATGCTGCTATAAGTGTAAGGGTGTCGAATGAACTGGGAGCAGGAAATGCTCGAGCTGCGAAACTATCGG TGATAGTGGTATCAGCTACGTCGATAGTGATCGGAGTAATATGTATGGTTTTAGTTTTCGCTACGAGAGGTTCTTTCCCTGAGCTCTTTACCAACAGTGA AGCTGTTGCGGAGGAAACGAGGAGACTTGCTACTTTGCTCGCCTTTACTGTTCTTCTCAACAGCCTTCAGCCGGTTCTATCGGGTGTGGCTATCGGAGCC GGATGGCAGTCTCTTGTGGCATACATCAATATTGGATGTTACTATATTGTTGGATTGCCTGCTGGGATTCTCCTTGGCTTTACATTCGGCTTCGGGGTTG AGGGTATATGGTCGGGAATGATTGTGGGAGTTGCGTTGCAGACCGTAATTCTAGTGGTTATAACGGCTATAACTGACTGGGATTCTGAAGCTGCAAAGGC TGAGGGTCGAGTTAAGAGATGGGGAGGAGGATCATCAACGCATTAG
AA sequence Show only first row Show all	>Lus10042130 pacid=23153882 polypeptide=Lus10042130 locus=Lus10042130.g ID=Lus10042130.BGIv1.0 annot-version=v1.0 MESPLLLQDEEAPNRKLLSDSSSVVRKFGNESRLLWKIAGPAIFTAVSQYSLGALTQTFVGFVGELELAAVSVENSVVAGLAFGVMLGMGSALETLCGQA YGAGEIRMLGIYMQRSWVILLATACLLVPVYIWSPPILSFFGETAQISNAAGEFAIWMLPQLFAYALNFPIQKFLQAQSKVQVMAWISAIVLLLHAFFSW LLILKLEWGLVGAAIVLNASWWIIIVAQLGYIFVTKSDGAWNGFSWLAFSNLWGFIKLSLASAVMLCLEFWYFMVLVVITGRLPNPLIPVDAISICMNLN GWDAMIAIGFNAAISVRVSNELGAGNARAAKLSVIVVSATSIVIGVICMVLVFATRGSFPELFTNSEAVAEETRRLATLLAFTVLLNSLQPVLSGVAIGA GWQSLVAYINIGCYYIVGLPAGILLGFTFGFGVEGIWSGMIVGVALQTVILVVITAITDWDSEAAKAEGRVKRWGGGSSTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	3.0	0.9682
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	3.2	0.9665
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	4.0	0.9632
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004704 [exp]	4.2	0.9599
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	4.2	0.9632
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	4.6	0.9560
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	5.5	0.9402
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	6.3	0.9627
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033338 [exp]	8.7	0.8895
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	11.2	0.9345

Compare expression of checked genes

Lus10042130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.