Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48010 870 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT5G14870 825 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT4G30360 773 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 756 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT2G28260 682 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G23980 642 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 637 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 636 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G01340 634 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT1G15990 634 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002363 [exp] 1248 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039486 [exp] 798 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039415 [exp] 798 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10015510 [exp] 797 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 788 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 779 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 743 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 729 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10021461 [exp] 701 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067000 [exp] 1019 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G097600 [exp] 798 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.013G108200 [exp] 765 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.018G009200 [exp] 734 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.009G010700 [exp] 675 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 657 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 642 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 640 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.001G043900 [exp] 632 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 630 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042132 pacid=23153925 polypeptide=Lus10042132 locus=Lus10042132.g ID=Lus10042132.BGIv1.0 annot-version=v1.0 ATGATGGATGATCTGACGTTCGGAAAGAAAGTCCCCTGGTGGGACCACATCCTCGATCCAGGTTCCGAGCTCGTCAGCAAATGGAACCACATCTTCCTCG TCACCTGCATCATCGGCCTCTTCGTCGACCCTCTCTACTTCTTCCTCCCGGTCATCAACGGCGACTCCTGCCTCGCCTCCGATACCCCCCTCGGGATCTG GGTCACCCTGGCCCGAACCATCACCGATCTGTTCTTCATCCTCCACGTCTGTATGAAGTTCCGCACTGCCTTCGTCGCCCCCAGCTCTAGGGTGTTCGGC AGAGGCGAGCTCGTCATGGATCCCAGGGAGATCGCGATTCGCTACGCCAGGTCTTGGTCCTTCATTATCGATGTATCCGCCGCTCTTCCTCTTCCTCAGC ATGCATCGTCTTCCCATGCTCACCATACCGTTTCTGTGATAGTTCTGATTCAATACATTCCTCGGATTGCGGTAATGTTTCCTCTGAATAGAAGGATTGT GAAAAGCACTGGTGTTGTAGCCAAAACCGCCTGGTCTGGAGCTGTCTATAACCTTCTCCTCTATGTTCTTGCCAGCCATGTTCTGGGAGCTTCATGGTAC CTGGCGTCTATTCAGCGTCAGCGAAACTGCTGGGAGAGACAATGTGCAAAGGAGAGGAATATAACCCATTCCCCTTCTTGTAAAATCGAGTATCTTGATT GTACAACCGAGAATAATCGTGAACGGCAAGCTTGGTTGAGAATCACCCATCTCATTTCAGCCTGTGATGCCTTCAACGACAAGAGTTTCCAATTTGGAAT GTACAAGGATGCATTCACCCATCATGTTGCCGAGGCAACTTTTGCTAATAAGTACTTCTACTGCCTCTGGTTCGGACTAAGAAACTTGAGTTCATATGGG CAAAGTTTGGCGACGAGCACTTACGAAGGCGAGACGATGTTCAGTATAGGGGTATGCATCATGGGACTGGTTCTGTTTGCACATCTCATTGGCAATATGC AGACGTATATGCAATCCACATCAGCTAGGTTGGAGGAATGGAGGATCAGGAGAAGAGATACAGAGGAATGGATGAGGCATCGTCAACTACCGCCGGATTT GCAAGAGAGGATTCGCCGATTTGTTCAATATAAATGGCTAGCAACCAGAGGTGTTGATGAAGAAACCATCTTGAGGGCTCTGCCTCTTGACATCAGACGT CAAATTCAACGGCATCTTTGTCTGGCTCTTGTTAGACGTGTCCCTTTCTTTGCTCAAATGGATGATCAACTCCTAGACGCCATATGTGAACGTCTAGTTT CATCCCTGAATACGAAGGATACGTACATTGTACGGGAAGGTGATCCGGTGAACGAGCTGCTGTTCATAATCAGGGGACAGTTAGAGAGCAGCACAACCAA CGGTGGGAGAATAGGGTTTTACAACTCCATCAATCTCAGAGCTGGTGATTTCTGCGGTGAAGAACTGTTGACATGGGCGATAAATCCATCAGCTCGAATG CACTTGCCTTTATCGACTAGGACAGTGAGGTGCCTGAGCGAAGTGGAGGCGTTTGCGCTAAGAGCCGTGGACCTGAAGTTCGTGGCGAAACAGTTCAAAC GGCTGCACAGCAAGACACTTCAGCATGCATTTAGGTACTACTCGCATCAATGGAGGACGTGGGGGGCGTGCTTCATACAAGCAGCATGGAAGAGGTTCAA GCAGAGGAAGCTGCAGCTGGAGTTGGCAAGGCAAGAGAGCTTGTTTTACTCACAATTCGATGACGGGGAAGGGTACTACAGCGACGAAGGGGATCAGGGG TCTTCGTCGGATGATGGTGGGGAAAATGGTCAGCATCTTGGAGCAACATTGCTTGCTTCGAAGTTTGCTGCGAATACAAGGAAAGGAGTGAATCATAAGC TCCCTAGTGGTGATGCTTTGAAAATGCCCAAGTTGTTCAAACCTCAAGAGCCTGATTTCAATGCTGAGCATGAGGATCTGTGA
AA sequence Show only first row Show all	>Lus10042132 pacid=23153925 polypeptide=Lus10042132 locus=Lus10042132.g ID=Lus10042132.BGIv1.0 annot-version=v1.0 MMDDLTFGKKVPWWDHILDPGSELVSKWNHIFLVTCIIGLFVDPLYFFLPVINGDSCLASDTPLGIWVTLARTITDLFFILHVCMKFRTAFVAPSSRVFG RGELVMDPREIAIRYARSWSFIIDVSAALPLPQHASSSHAHHTVSVIVLIQYIPRIAVMFPLNRRIVKSTGVVAKTAWSGAVYNLLLYVLASHVLGASWY LASIQRQRNCWERQCAKERNITHSPSCKIEYLDCTTENNRERQAWLRITHLISACDAFNDKSFQFGMYKDAFTHHVAEATFANKYFYCLWFGLRNLSSYG QSLATSTYEGETMFSIGVCIMGLVLFAHLIGNMQTYMQSTSARLEEWRIRRRDTEEWMRHRQLPPDLQERIRRFVQYKWLATRGVDEETILRALPLDIRR QIQRHLCLALVRRVPFFAQMDDQLLDAICERLVSSLNTKDTYIVREGDPVNELLFIIRGQLESSTTNGGRIGFYNSINLRAGDFCGEELLTWAINPSARM HLPLSTRTVRCLSEVEAFALRAVDLKFVAKQFKRLHSKTLQHAFRYYSHQWRTWGACFIQAAWKRFKQRKLQLELARQESLFYSQFDDGEGYYSDEGDQG SSSDDGGENGQHLGATLLASKFAANTRKGVNHKLPSGDALKMPKLFKPQEPDFNAEHEDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	0	1
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	1.0	0.9052
					Lus10018970 [exp]	3.2	0.8853
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	3.9	0.8658
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	5.7	0.8575
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	6.5	0.8458
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10025032 [exp]	6.5	0.8289
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	7.7	0.8566
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	12.0	0.8429
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	12.2	0.8504
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	13.6	0.7866

Compare expression of checked genes

Lus10042132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.