Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24450 165 / 4e-51 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002362 [exp] 325 / 2e-114 AT1G24450 171 / 3e-54 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078400 [exp] 163 / 1e-50 AT1G24450 193 / 3e-63 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1) Potri.015G073900 [exp] 154 / 2e-47 AT1G24450 157 / 6e-49 NUCLEAR FUSION DEFECTIVE 2, Ribonuclease III family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain
Representative CDS sequence Show only first row Show all	>Lus10042133 pacid=23153994 polypeptide=Lus10042133 locus=Lus10042133.g ID=Lus10042133.BGIv1.0 annot-version=v1.0 ATGGATTCTCGAAGCTCCATCTTCTTCTCCCTATTCACCGCTCTGGCAATCCTCTCTCATTCACAGGTAACTGAGTTTGATCCTAGGCTCGAGTCCATTG AGTTTCAGTGGTCCGAGGTCATTGATCCTCCGAAGTCCATTGATCCAAAGATCAAGTCCATTGATCCGAGGATCGAGCTCCACTTATCGCCATTCTCATC CGCTCTCGTAGCTCTCCAGAAACAACTCAACTATACTTTCCAGAACGATGGGCTGCTCCGCCTGGCAATGACCCACTCCTCTTACTCCATGGAGAGCAAC AAGGCGCTGAGCATCTTGGGTGCCAATGTCATTGACATGGCTGTCTCAATGCAGTCCCTCAAGAGAGACATTGACATCTCTTCAACCACTCTCACCAAAA GGATTGCGGATGTTTCAAACGTGGAAAAGTGTGCTACCGATGGGAAGCGATTGGGGCTGGAGAAGATCGTGCGAGTTTCGTCCAAGACCGATCCTTCCAC GGATTCTGTGGTATGTGGTGCTTTCAGATCGATCTTCGGTGCTATTGCTTTGGATACCGGGAAGGCTGATAATGCCGGGAAGGTGTTCTTGAATGTTCAT GTTGGTGGTGTTGGTGTTGATGGTGGAGGTTGGAAGATCTCATCATATCATCTTGTAAGCCTTTTGAACCTCTACTGCAAGAGTGTGTGGGCACGGTTGG TAACTCGATATGGTGTTTGA
AA sequence Show only first row Show all	>Lus10042133 pacid=23153994 polypeptide=Lus10042133 locus=Lus10042133.g ID=Lus10042133.BGIv1.0 annot-version=v1.0 MDSRSSIFFSLFTALAILSHSQVTEFDPRLESIEFQWSEVIDPPKSIDPKIKSIDPRIELHLSPFSSALVALQKQLNYTFQNDGLLRLAMTHSSYSMESN KALSILGANVIDMAVSMQSLKRDIDISSTTLTKRIADVSNVEKCATDGKRLGLEKIVRVSSKTDPSTDSVVCGAFRSIFGAIALDTGKADNAGKVFLNVH VGGVGVDGGGWKISSYHLVSLLNLYCKSVWARLVTRYGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10042133 [exp]	0	1
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	2.2	0.8819
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10025772 [exp]	3.9	0.8386
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	6.9	0.8366
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	10.2	0.8420
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	10.8	0.8609
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	14.0	0.8239
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	14.0	0.8529
AT4G21865			unknown protein		Lus10023724 [exp]	17.3	0.8298
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	17.4	0.7468
AT3G07720			Galactose oxidase/kelch repeat...		Lus10006392 [exp]	18.7	0.7948

Compare expression of checked genes

Lus10042133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.