Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11130 1353 / 0 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT1G14790 721 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT3G49500 497 / 3e-156 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19930 116 / 5e-26 RNA-dependent RNA polymerase family protein (.1) AT2G19910 106 / 4e-23 RNA-dependent RNA polymerase family protein (.1) AT2G19920 93 / 7e-19 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002361 [exp] 974 / 0 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10019164 [exp] 750 / 0 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10002910 [exp] 490 / 2e-157 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002017 [exp] 498 / 3e-156 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10034262 [exp] 238 / 7e-70 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10034390 [exp] 96 / 3e-23 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 105 / 9e-23 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10034391 [exp] 54 / 1e-08 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073700 [exp] 1540 / 0 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.008G136100 [exp] 755 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 727 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 726 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 711 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.018G028100 [exp] 519 / 2e-164 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 503 / 3e-158 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G164400 [exp] 126 / 3e-29 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.007G081300 [exp] 123 / 3e-28 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [flax] [poplar] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10042134 pacid=23153580 polypeptide=Lus10042134 locus=Lus10042134.g ID=Lus10042134.BGIv1.0 annot-version=v1.0 ATGGGGGAGGTAGCGGTGGAATCCGCGCCGGCAGCAATAAACGCGGTCGAGAGGCCGACGGTCAGGGTCTCAAACATCCCGCTAACCGCCATCGCCCAGA ACCTCCAGGACTTCTTGGAGTCTCTACTCGGCCCGGACTCGGTCTTCGCCGTGGAGATCATCTCCGATCGGAAGAACTGGAAGTCCCGCGGCTTCGGCCG TGTCCAATTCGCCTCCCTTGCGTTCAAACGCGAGGTTGAATCCCTGTCCCGTAGCGGGAAGCTTGTGTTCATGAACCGAAACCTGAACATCTCGGAGACA TACGACGACATTGTGCCGAGGCCAGTCGAGGATCGGAACGGGGTCGAGAATGGGACGCTGTACGCTGGGTTTATGAACGCGAAGGACTGGATGTGCGCGC TGGAGTACTGGGAGGGTGTGAGATGTTGGGTTTTGACGGAGAAGCGGAGGGTGGAGTTTTTTGTGACGGTTGAGGGCGAGTGTTACAAGCTAGTTGTTCC GTTTGAAGATATTGTGGATGCTTATGGATGTTGCTGGGCGGATGATTCTGAAGTGAATGCACTTCTCTTGAAGGTACAATTTGGTCCAAGAGTATATAAA AAATTGTCTGGTCCAAATGTTGCTTCCAAATTCGACAAGGATAGATATAACATCTGCAAGGAAGACATCAAATTCGTTTGGGTCCGTACAACTGACATTT CCGCAGTGAAGTCAATTGGGCATTCTAATTCATTCTGCTGGGAGGTGGATGAAGCATCTGCTTTCGAGATTTTCAAGTGTCTTCCATATTATGGGGGACT AATTAAAGGTATGACTTTGGAGGACTGGTTTGAGTATTGTTCTGCATCTGAAACAGTTCCGTTGGTGAAATGTGGGGCAGATGTTGGAAACTTAGATCAT GAGATCATTTTCCAGCTAAATTCTCTTGTTCATACCCAAAAGATAAGTCTAGCCGCTGTAAATTCTGTTCTAATCAATATTCTCAGTCGTCAGAGTATAG AGACTGCTTTGAGAATTCTTCAGAAGTTGCACCAGTTGAAGTCCACATGTTATGATCTAGAGGGCTTTGTACAGACTCAGTTAAGTGCTCCTAGCAGAAA CCTTCAAGGACCTTTGCCTGCATCTCTGCGAAGCTCCACAAGTAACAAGATAATGTGTTGTCACAGGGCTTTGATTACACCTTTGAAGATTTACTGCTTA GGGCCTGAGCTTGAATCATCTAACTACGTTGTAAAACACTTCTCAAAGCATGCTTCAGACTTTATGAGAGTGACATTCGTTGAAGAAGATTGGAGTAAGC TTCCTCCTCAGGCTATTTCTACAAGCATCCAGCAAGGTGTATGTGCAAGACCTTACAGAACAAAAATATATGATAGGATATTATCTATCCTTCGGGATGG GTTTGTGATTGGAAAGAAGAAGTACGAATTTCTAGCATTCTCAGCCAGTCAACTTCGGTCGAATGCTGTTTGGATGTTTGCTTCTAATGAAGATTTGAAA GCAGAACACATTCGAGAATGGATGGGTTGCTTCAATAAGATCCGCAGTGTCTCAAAATGTGCAGCAAGGATGGGTCAACTGTTCAGTGCTTCTTCACAAA CTGTAGAGGTTCCAGCACATGATGTAGAGATCATTCCAGACATTGAAATTACTGCGGATGAAATTAGCTACTGTTTCTCAGACGGCATTGGGAAAATCTC TCTTCCTTTTGCTATACAAATTGCTCAAAAGTGTGGATTAAGCGACATTCCATCAGCCTTTCAAATTCGATATGGTGGATATAAAGGTGTAATTGCTGTT GACCGTACTTCTTTCAGGAAGCTGTCATTGAGACCTAGTATGCTCAAATTTGAGTCAAACAACAGGATGCTTAATATCACTAAGTGCAGTGATGCCATGC CTTGCTATTTGAATCGGGAGATCATTTCTCTTTTGTCTACTTTGGGAGTGAGAGATGAAGCATTTTTAGCTTTGCAGCTGGAACAACTGCAACAAGTGGG CATAATGCTTAGCAGGCGAGGAGCAGCTTTGGGCGTCCTAGAAAATCTAGCTTGGGCTAATGCTAAGAACTCTTTGGTGAAGATACTGCTTCAAGGTTAT GAGCCTAACGAGGAACCTTACCTCTCAATGATGCTACAGTCTTATCATGATAATATGCTGTCAGAATTGAGAGGTAGGTGTCGAATTCTAGTCCCTAAGG GCCGTGTCCTGATTGGATGCTTGGACGAGAGCAGCATCCTTGAATATGGCCAAGTTTATGTGCGTCTGACAAAGACCAAAACAGAGCTACAGTGTGGGGA TCAGAGTTTCTTCCGGAATGTGGATGAGAAGACATCTGTAATAACTGGTAAGGTGGTTGTCACTAAGAATCCGTGTCTGCATCCAGGTGATATCAGAGTG CTTGACGCTGTATATCATGAAGTCTTGGAAAAGACGGGTTTGGTCGATTGTATTCTTTTCCCACAAAAGGGACCACGGCCTCATCCAAATGAATGCTCTG GTGGCGACCTTGATGGCGACCTGTATTTTATTAGTTGGGATGAAGACCTGATTCCACCGCAAGCTGTGGCTCCTATGGACTATATCGGAGGACGGCCTCG AATCATGGATCATGCTGTGAAAATGGAGGAGATACACAAGTTCTTTGTTGATTACATGATAAACGATACTCTGGGTGCCATCTCCACCGCGCATTTAGTT CTTGCCGACAAGGAGCCAGAGAAAGCCTCCAGTGAAAAATGCCTGGAGTTGGCTAATCTGCATTCAATGGCAGTCGATTTCGCCAAAACTGGAGCACCAG CTGAGATGCCTAGGTATCTAAAACCCAAAGAATTCCCGGATTTCATGGAGAGGACAGAGAAGCCAATGTATGTCTCGAATGGAGTACTGGGAAAGCTCTA CCGTGCCGCTCTAAACTCGTCCACTCAAGCTGGATTCAGCTTTGTTTGGTCGAGGCAAGTTGCTGAATCAACTTACGACCGTGATCTAGAAGTGGAAGGT TTCGAGAACTTCCTGCCAACCGCTGCATGCCACAGGGCCATGTACATGGAGAAAATGAGAGAGCTGATGAACTATTACGATGCGAGGCATGAAGACGAGA TACTCACTGGGAATCTGCGCAGCAAGGCGGCGTATCTACAGCGTGACAACAGGAGGTACGGGGAGACTAAAGACCGGATCCTTGTAGCGATAAAATCTCT ACAGAAGGATGCTAAGGATTGGTTCGAGGGAAGCTGCAGCATAAACGATTATCAGAGGTTGGCATCCGCGTGGTACCATGTAAGTTATCATCCGGATTAT TTCGAAGAAGGGATCTCAGGGTTGAGCTTCCCGTGGATCCTCGTCGATATTCTGGTTGGTATCAAATCTATGAAGAACGGAAAGGGCAGCAAATCAGGTG AGAGCAGCAGCGCCAGTAATGCTACCTAA
AA sequence Show only first row Show all	>Lus10042134 pacid=23153580 polypeptide=Lus10042134 locus=Lus10042134.g ID=Lus10042134.BGIv1.0 annot-version=v1.0 MGEVAVESAPAAINAVERPTVRVSNIPLTAIAQNLQDFLESLLGPDSVFAVEIISDRKNWKSRGFGRVQFASLAFKREVESLSRSGKLVFMNRNLNISET YDDIVPRPVEDRNGVENGTLYAGFMNAKDWMCALEYWEGVRCWVLTEKRRVEFFVTVEGECYKLVVPFEDIVDAYGCCWADDSEVNALLLKVQFGPRVYK KLSGPNVASKFDKDRYNICKEDIKFVWVRTTDISAVKSIGHSNSFCWEVDEASAFEIFKCLPYYGGLIKGMTLEDWFEYCSASETVPLVKCGADVGNLDH EIIFQLNSLVHTQKISLAAVNSVLINILSRQSIETALRILQKLHQLKSTCYDLEGFVQTQLSAPSRNLQGPLPASLRSSTSNKIMCCHRALITPLKIYCL GPELESSNYVVKHFSKHASDFMRVTFVEEDWSKLPPQAISTSIQQGVCARPYRTKIYDRILSILRDGFVIGKKKYEFLAFSASQLRSNAVWMFASNEDLK AEHIREWMGCFNKIRSVSKCAARMGQLFSASSQTVEVPAHDVEIIPDIEITADEISYCFSDGIGKISLPFAIQIAQKCGLSDIPSAFQIRYGGYKGVIAV DRTSFRKLSLRPSMLKFESNNRMLNITKCSDAMPCYLNREIISLLSTLGVRDEAFLALQLEQLQQVGIMLSRRGAALGVLENLAWANAKNSLVKILLQGY EPNEEPYLSMMLQSYHDNMLSELRGRCRILVPKGRVLIGCLDESSILEYGQVYVRLTKTKTELQCGDQSFFRNVDEKTSVITGKVVVTKNPCLHPGDIRV LDAVYHEVLEKTGLVDCILFPQKGPRPHPNECSGGDLDGDLYFISWDEDLIPPQAVAPMDYIGGRPRIMDHAVKMEEIHKFFVDYMINDTLGAISTAHLV LADKEPEKASSEKCLELANLHSMAVDFAKTGAPAEMPRYLKPKEFPDFMERTEKPMYVSNGVLGKLYRAALNSSTQAGFSFVWSRQVAESTYDRDLEVEG FENFLPTAACHRAMYMEKMRELMNYYDARHEDEILTGNLRSKAAYLQRDNRRYGETKDRILVAIKSLQKDAKDWFEGSCSINDYQRLASAWYHVSYHPDY FEEGISGLSFPWILVDILVGIKSMKNGKGSKSGESSSASNAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10042134 [exp]	0	1
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	1.0	0.9425
					Lus10014954 [exp]	5.7	0.9200
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10008047 [exp]	10.4	0.9246
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008928 [exp]	15.7	0.8619
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	16.9	0.9173
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	20.3	0.9167
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	20.5	0.9016
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10017684 [exp]	21.5	0.9049
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	22.4	0.9178
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	22.5	0.9102

Compare expression of checked genes

Lus10042134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.