Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 221 / 4e-63 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 202 / 2e-56 Leucine-rich repeat protein kinase family protein (.1.2) AT1G68400 201 / 6e-56 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G05160 197 / 1e-54 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G58300 195 / 8e-54 Leucine-rich repeat protein kinase family protein (.1.2) AT2G36570 195 / 1e-53 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 191 / 3e-52 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 190 / 4e-52 RLK902 receptor-like kinase 902 (.1) AT1G48480 189 / 1e-51 RKL1 receptor-like kinase 1 (.1) AT1G10850 185 / 4e-50 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002360 [exp] 1084 / 0 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10032162 [exp] 508 / 8e-173 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10014525 [exp] 508 / 8e-173 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10039422 [exp] 333 / 1e-105 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10039483 [exp] 311 / 3e-97 AT5G58300 241 / 5e-71 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 212 / 6e-60 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035138 [exp] 209 / 2e-58 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10002299 [exp] 199 / 3e-58 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10021673 [exp] 207 / 4e-58 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078100 [exp] 627 / 0 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.015G073500 [exp] 625 / 0 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 218 / 2e-61 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 215 / 6e-61 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G117200 [exp] 214 / 1e-60 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 213 / 3e-60 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 209 / 6e-59 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 199 / 3e-55 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G130600 [exp] 197 / 7e-55 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.003G020600 [exp] 197 / 2e-54 AT2G36570 293 / 6e-90 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042135 pacid=23153477 polypeptide=Lus10042135 locus=Lus10042135.g ID=Lus10042135.BGIv1.0 annot-version=v1.0 ATGGATGGAATCCCCATCTGGGTAATCCTGATTTCATCTCTTCTACTCTTGATTCCAGGCTCCAGTTCTGAATCAGTAGATGTCAGGAATTCTCTGATCG AGTTCATCAAGAAGCTCTCGGCCAACGAAAATTTCCCGCAGGATCCCAGCTGGGGATGGAACTCGAGTTCGGACCCTTGTACTGCAAAATGGAGAGGCGT GGAATGCGATACGAAAGGATTCCAAGTCAAGAAGATCACTCTCGACGACTTCAACCTTACAGGATCCATCGATGCAGAGTTGGTCTGTTCTGCTCCCGGA CTATCCGTCCTGAGCATGAACAGAAACATGATCACTGGTGAGATACCTGACGAGATTGCTGATTGCAAGAAGCTGACTCATCTCTACATGAGTGGGAACC GGTTGTCGGGTGAAGTTCCTGACGAAGTCTCCAGGCTGAATAACCTGAAAAAATTCGACATTTCCAACAACAGCTTTTCAGGTCAACTCCCGCAGCTCGC TAGGGTTTCGGGATTGCTTTCGTTCCTTGTTCAGGACAATAGTTTCAGTGGTGGGATCCCCGAAGGGTTCGATTTCACTAACCTGGAAAACTTCAACGTC TCCAACAACAACCTGAGCGGTCCAATACCAAACTTGCAGGGCAAGTTTGGTTCAGACAGCTTCTCAGGAAATGAGAAATTGTGCGGGGAGCCGTTCCCAA CTTCCTGCCCTGAATCTCCACCGTCGTCTAACTTGACTCCAAATTCTCCGTTACCGAATAATACTACACCATCCTCCGCGAAAGACAGGAACAAGTCGCG AGACCAGTTCCTGATCTACTCGGGGTACATGCTGCTAGTCCTGGTGGTGGTTTCATTCGTTATCGTGAAACTGCTCATCAGGAACAAGAAGAAGAAGAAC AAAAACAACAATTATCCTAAACTCAACTCCGAGAGAAGAGTCAGAACTACTCCTGAAATAAGTCTCAAGACGAGCAGTCAGAGTACTTCGAGCGAGGCTA ACAAGATGGTTGGAGTTAACAACAGCAGATCGGAGATGAGGTCGGAGTATTCGATAACATCGGGGGACAGTGGAGTCGCAGCAGCTTCGTTCGTGCTGCT GTCGAGTCCTTTGGTGAAAGGGGTGAAGTTCAACGATCTGCTGAGGGCTCCGGCCGAGCTGCTCGGTAAAGGGAAGCATGGGAGTGTGTACAAAGTGGTG TTGGATAATGGTGTTGGTGTGGCAGTAAAGAGGACTAAAGACTGGGGGATTTCTAGTGAGGAGTTTACAAGGAGGATTAGGAAGATTGATAAGGTGAAGC ATCCAAGAGTTTTGCCTCCACTTGCTTTGTATTGCTCTGATCATGAGAAGCTTTTGGTGTATGAGTACCAGCCCAATGCCAACCTCTTCATGCTTCTCCA TGGATCGCAGAACGGGCAAGTGTTGGACTGGGGGAGCAGGCTAGTGATAGCATCATGCGTATCAGAGGCACTAGCATTCATGCACTTGGAGCTAAACCAA GACGGCATAGCACACGGCAACCTGAAATCAACCAACATCCTCTTCAACAAGGGCATGGAGCCCTGCGTGAGTGAGTACGGACTCATGGTGGCCGAAACTC AAACCACCCCTGATCGTCACCAACAGCCTTACGGCACTTTCAAGGCCGATGTTTACGCGTTCGGGGTGCTGCTCCTCGAGATGCTGACAGGGAAGCTCGT CCAGAACAACGGGGATGATCTCGCGAAATGGGTCCACTCGGTCGTTCGAGAAGAGTGGACTGTGGAGGTTTTCGAGCGGACTCTGACAGCTGAAGGTGCT AACGAGGAGAGGATGGTGAACTTGTTGCAGGTTGCTTTCAAGTGCATCAGTCCTTCTCCTAATGAGAGGCCAAGCATGAGCCAAGTTGCAGCTATGGTGA ATGTTATCAGAGAAGAAGAAGATAGATCTGTTATCTCGGAAGCGTAG
AA sequence Show only first row Show all	>Lus10042135 pacid=23153477 polypeptide=Lus10042135 locus=Lus10042135.g ID=Lus10042135.BGIv1.0 annot-version=v1.0 MDGIPIWVILISSLLLLIPGSSSESVDVRNSLIEFIKKLSANENFPQDPSWGWNSSSDPCTAKWRGVECDTKGFQVKKITLDDFNLTGSIDAELVCSAPG LSVLSMNRNMITGEIPDEIADCKKLTHLYMSGNRLSGEVPDEVSRLNNLKKFDISNNSFSGQLPQLARVSGLLSFLVQDNSFSGGIPEGFDFTNLENFNV SNNNLSGPIPNLQGKFGSDSFSGNEKLCGEPFPTSCPESPPSSNLTPNSPLPNNTTPSSAKDRNKSRDQFLIYSGYMLLVLVVVSFVIVKLLIRNKKKKN KNNNYPKLNSERRVRTTPEISLKTSSQSTSSEANKMVGVNNSRSEMRSEYSITSGDSGVAAASFVLLSSPLVKGVKFNDLLRAPAELLGKGKHGSVYKVV LDNGVGVAVKRTKDWGISSEEFTRRIRKIDKVKHPRVLPPLALYCSDHEKLLVYEYQPNANLFMLLHGSQNGQVLDWGSRLVIASCVSEALAFMHLELNQ DGIAHGNLKSTNILFNKGMEPCVSEYGLMVAETQTTPDRHQQPYGTFKADVYAFGVLLLEMLTGKLVQNNGDDLAKWVHSVVREEWTVEVFERTLTAEGA NEERMVNLLQVAFKCISPSPNERPSMSQVAAMVNVIREEEDRSVISEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26730			Leucine-rich repeat protein ki...		Lus10042135 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10013863 [exp]	1.0	0.7005
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	2.4	0.6639
AT3G53240		AtRLP45	receptor like protein 45 (.1)		Lus10043328 [exp]	3.2	0.6917
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	20.2	0.6315
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	21.8	0.6168
					Lus10015849 [exp]	26.5	0.5983
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	29.9	0.6248
AT5G53480			ARM repeat superfamily protein...		Lus10014540 [exp]	31.4	0.5914
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	32.6	0.6095
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	33.3	0.6516

Compare expression of checked genes

Lus10042135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.