Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41340 258 / 1e-88 ATUBC4, UBC4 ubiquitin conjugating enzyme 4 (.1) AT1G63800 254 / 3e-87 UBC5 ubiquitin-conjugating enzyme 5 (.1) AT2G46030 239 / 1e-81 UBC6 ubiquitin-conjugating enzyme 6 (.1) AT1G64230 97 / 1e-25 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 96 / 2e-25 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08690 96 / 2e-25 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G78870 95 / 4e-25 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT5G53300 95 / 6e-25 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G16890 94 / 9e-25 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT4G27960 93 / 2e-24 UBC9 ubiquitin conjugating enzyme 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002359 [exp] 302 / 1e-105 AT1G63800 275 / 5e-95 ubiquitin-conjugating enzyme 5 (.1) Lus10014763 [exp] 246 / 5e-84 AT1G63800 294 / 6e-103 ubiquitin-conjugating enzyme 5 (.1) Lus10032274 [exp] 243 / 5e-83 AT1G63800 278 / 5e-97 ubiquitin-conjugating enzyme 5 (.1) Lus10036372 [exp] 238 / 1e-80 AT1G63800 286 / 9e-100 ubiquitin-conjugating enzyme 5 (.1) Lus10024638 [exp] 205 / 7e-68 AT1G63800 229 / 2e-77 ubiquitin-conjugating enzyme 5 (.1) Lus10014187 [exp] 96 / 3e-25 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 96 / 3e-25 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 95 / 4e-25 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 95 / 4e-25 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073400 [exp] 286 / 5e-100 AT5G41340 268 / 1e-92 ubiquitin conjugating enzyme 4 (.1) Potri.001G101900 [exp] 260 / 6e-90 AT5G41340 292 / 3e-102 ubiquitin conjugating enzyme 4 (.1) Potri.003G129700 [exp] 253 / 6e-87 AT5G41340 284 / 5e-99 ubiquitin conjugating enzyme 4 (.1) Potri.002G161000 [exp] 252 / 2e-86 AT1G63800 288 / 1e-100 ubiquitin-conjugating enzyme 5 (.1) Potri.014G086600 [exp] 248 / 3e-85 AT1G63800 283 / 8e-99 ubiquitin-conjugating enzyme 5 (.1) Potri.011G111400 [exp] 96 / 2e-25 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.016G138900 [exp] 95 / 4e-25 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G083800 [exp] 95 / 4e-25 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.006G110200 [exp] 95 / 4e-25 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 95 / 4e-25 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10042136 pacid=23153563 polypeptide=Lus10042136 locus=Lus10042136.g ID=Lus10042136.BGIv1.0 annot-version=v1.0 ATGGATGTCATGAAACTGATGATGAGCGATTACAATGTGGAGACGATAAACGATGGACTCAATGAATTTAATGTGGAATTTAATGGCCCGAAAGAAAGCC TATATGAAGGCGGGGTCTGGAAAATACGTGTTGAACTTCCTGATGCTTATCCATACAAGTCTCCTTCGATTGGGTTCGTGAACAAGATATTTCACCCAAA CGTCGATGAACTCTCGGGTTCTGTTTGTTTGGATGTTATCAATCAATCATGGAGTCCAATGTTCGATCTCTTGAACGTGTTTGAAGTTTTCCTGCCACAG TTATTATTGTACCCGAACCCATCAGACCCACTGAATGGCGATGCAGCCGCGTTGATGATGAAAGACCGCGAAAAGTATGATAAGAAAGTGAAAGAGTACT GTGAACAATATGCTAAGAAGGAAAACATAGTGAAATCAACGGCTGAAGAAGAGAGCGAAGACGAAGAAGAAGATGTCAGCGACGATGATCGCAGATCAAG CGACGAGGAAGATGATGATATTGCTGGACATGCAGACCCATAA
AA sequence Show only first row Show all	>Lus10042136 pacid=23153563 polypeptide=Lus10042136 locus=Lus10042136.g ID=Lus10042136.BGIv1.0 annot-version=v1.0 MDVMKLMMSDYNVETINDGLNEFNVEFNGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQ LLLYPNPSDPLNGDAAALMMKDREKYDKKVKEYCEQYAKKENIVKSTAEEESEDEEEDVSDDDRRSSDEEDDDIAGHADP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10042136 [exp]	0	1
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10038764 [exp]	3.5	0.7329
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10036916 [exp]	4.5	0.7466
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	12.3	0.7236
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	13.8	0.7192
AT5G16540	C3HZnF	ZFN3	zinc finger nuclease 3 (.1.2.3...		Lus10031527 [exp]	13.9	0.7016
AT2G14045			unknown protein		Lus10042548 [exp]	19.6	0.6900
AT1G13570			F-box/RNI-like superfamily pro...		Lus10019144 [exp]	23.4	0.6408
AT4G35320			unknown protein		Lus10022985 [exp]	30.0	0.7102
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	31.1	0.7131
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10023286 [exp]	34.0	0.7187

Compare expression of checked genes

Lus10042136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.