Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48050 732 / 0 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 728 / 0 BAH domain ;TFIIS helical bundle-like domain (.1) AT3G48030 112 / 2e-26 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT4G11560 105 / 7e-23 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 71 / 3e-12 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 67 / 3e-11 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G24200 63 / 2e-09 Transcription elongation factor (TFIIS) family protein (.1) AT3G43990 61 / 4e-09 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G22140 50 / 2e-06 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT5G09850 50 / 7e-06 Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033410 [exp] 1256 / 0 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10002358 [exp] 144 / 1e-40 AT3G48030 144 / 1e-43 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) Lus10008492 [exp] 99 / 9e-21 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 98 / 2e-20 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10009128 [exp] 76 / 2e-13 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 74 / 5e-13 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 70 / 1e-11 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 67 / 8e-11 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10020020 [exp] 53 / 4e-07 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077500 [exp] 1014 / 0 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 1000 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 937 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 934 / 0 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G078000 [exp] 118 / 2e-31 AT3G48030 156 / 2e-48 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G073300 [exp] 117 / 9e-31 AT3G48030 156 / 4e-48 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G104300 [exp] 102 / 4e-22 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 92 / 8e-19 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.002G020000 [exp] 74 / 8e-13 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.005G241400 [exp] 68 / 4e-11 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04588 [flax] [poplar] HIG_1_N Hypoxia induced protein conserved region PF01426 [flax] [poplar] BAH BAH domain PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10042137 pacid=23153654 polypeptide=Lus10042137 locus=Lus10042137.g ID=Lus10042137.BGIv1.0 annot-version=v1.0 ATGCATGGACGGGAAGGTGAGGAGAGGCAAAAAGCTCGGCACATGTGGACAGATCCCACGCCTGCCAATCTGGTTGTAACGGGTGATGGTTCTTTGTCTC CTCCGGTTCTTAATTCGTTTTACAAGGACGGCCGGAAAATCTGTGTTGGGGATTGCGCTCTTTTCAAACCACCAGAGGAGTCACCTCCTTACATCGGAAT AATTCACTCTGTGACTGCAAGTGAAGATAATAACTTTATTTTAGGTGTGAATTGGCTTTATCGACCTGCTGAACTAACGCTTGTCAAAGGCATCCAGTTG GACGCTGCGCCAAACGAAATATTTTATTCCTTTCACAAGGATGCTGCATCTGCTGCATCACTACTTCATCCGTGTAAAGTTTCCTTCCTTCCCAAAGGTG CTGAGCTTCCATCAGGGATTTCTTCATTTGTGTGCCGCCGTGTTTATGACATAAACAAAAAGTGTTTATGGTGGCTTACTGATCAAGATTATATTGATGA ACATCAAGAAGAAATAAAAGAAGTATTATCTAAGACTCGCATAGACATGCATACAACAGTGCAGTCCGGAGGACATTCACCAAAGCCAATGAATGGTCCA ACTGCTACATCACAGTCAAAACCAGGTTCGGATAGCGTGCAGAATAGTGGTTCGTCCTTTCCTTCTCAAGATGATGGGGATTCTGCTAACTCAAGAGCAG AGAACAACTGGAAATCTGAAATAACAAAAATGAAAGAGAAAGGAGGTCTTGTAGATTACTACGCTGTTGAGAAGTTGGTGCAACTTATGCTATCTGATAG AAATGAGAAGAAGATAGATTTGGTTGGTCGGTCCATGATGGCTAGTATAGTAGCTGCCACTGACAAGTTCGACTGCCTTATTTGGTTTGTTAAGCACAGA GGGGTGCCTGTTTTTGATGAATGGATACAGGAGGCACATAAAGGAAAGGTTGGTGATGGTAGTGGTCCCAAGGACAGTGACAAATCAGTAGAAGAGTTTC TCTTAGTCTTACTCCGTGCTCTTGATAAACTCCCTGTTGATCTACATGCTTTACAAACATGTAACATTGGGAAGTCTGTCAACCATCTACGTACTCACAA GAGCTTGGAAATTCAGAAGAAGGCTAGGAGTTTGGTTGACACTTGGAAAAAGCGTGTTGAGGCTGAAATGGATGCGAAGTCTGGGTCAAACCATGGTGTC CATTGGGCTACAAGATCACGTCTTCCGGATGCTTCCCATGGTGGGAACAGACATACAGGTGTGGCCTCTGAGGTTGCCCTCAAGAGTTCTACCAGTCAGC TTGCTGCTTTGAAAACTGCGCCAGCGAAGCTAGTCTCTGCAGAGGCTATGACGAAGTCGGTATCTGGTTCTCCAGGTTCTAATAAATCAACCCCAGTGCC TGTGCCTGGGGGTAGCACTGCTAAAGAAGGGCAGGCTCGATATGGCAGTGGTGCGGGTGGATCCGACGCCTCTCCAACAATGGTTAGGGATGAAAAGACC AGCAGCTCTAGCCAGTCGCACAATAATAGCCAAACTGGTTCTGGTGACCAAACCAAAGCCGCAGGATTTTCTGGGAAGGAGGACACAAGGAGCTCTGGTT CTGTAACGCCAGGTAGGGTTGCTAGTGGTTCTTCACGGCACCGTAAGTCTAACAATGGCTTTCTGGGCCAAGGTGGAACCATAGTTCAACGGGAAACTGG GTCGGGTAGAAATTCCCCATTGCGAAGAAATTCCAGTTCAGAAAAGGTATCACAAATTAGTTTGACATCTGATAAGGCAGTTGATGTTCCAGCAGTTGAA GCCAACAATCACAAAATCGTAGTAAAGATTCCTAACAGAGGCCGCAGTCCCGGCCAGAGTGCCAGTGGAGGAGGAGGATCAATTGATGATCCTTCTGCTG TGCACATTGGCTCTTGCTCTCCTGCAGTTTCTGATATGCAGGACCAACTCGATCACAATTTGAAAGATAAGGCTGATGCTTCCCGTGCTAACGTAGTCTC TGATGTTAATACTGAGTCGTGGCAGAGCAATGATTTCAAAGATGTGTTGACTGGGTCAGATGAAGGAGATGTTTCTCCTACAACAGATCTGGATGATGAA CGCAGTAGGCCCAGTGAAGATGCCAAGAAGTTGCCAGAAGTCTACAAATCTGCATCATTACCCGCTAGCAATGAGTACCAGTTGGCAAAGTTAAATGATG CTTCATTTAGCTCCATAAATGCCTTGATTGAAAGTTGTGTGAAACACTCTGATGCCAATGCATCGACATCAGCAGCTGACGAGGTTGGGATGAACCTGCT TGCTAGTGTTGCTGCTGGAGAGATGTCTAAATCGGATGTGGCTCCTCCAGCCTCTCCTCCCCAGCTGCAGTCGCATCCAGATGGCAATTTGGCTGATGAG CATGGTCGGTCAGGTGATAATATTGTTGGTGAATCTCACAACAAAGGTGGTGGTGTTGATTCGTTAGAGGTTGAGGTGGATGGTGCCTCTCGGGATAAAT CTCCTATGCAGCTTGGCCATGATCCAATTTCTTCTGCTGTAGAAGCCCAGCAAACTAGAGAAACGGGTAAGGAAGATAAAATGAATGGAATGTTGAGTTG CAGTTCTGCTCAGCTTCCTGCTGTGGTTGCTGGGGAAAAAAACTTGGGCGGGGTTGTGAAACAACCGGAGAAAGAAGATGTTAGTAGCACACTCAATGGA GATGCTACCTCTGATATTAAAGAGAAACCACTACCATCCTTTTCAACAGAACCTAAGGTTAATGTTGTTGGTGGCGATGTTAAGGTTGGTGGAGTTCAAA GTTCATCTTCTCAGTTGGGTTCTAGTGCTGTTGGGGAGAATGAGAAACTGCGGAATGAAGAGTTGAAAGTTGGTTTACTGGACGAGAAGCCACCTGCTGT GATTCATCCGGATTCTGGTGGGAGAACTGATGTTCAGATGCAGCAGGTGGTTTCTAAATGTCATGAACTGAAAAATGAAGATGTTGATGAAACTGGTGGA AGAAAATTGTCCCCTGCAAAGCAAAAAGCTGGTCAGCTTTCTGACGGAACTGCTACTGGTCTAAAGGAAAAGCCCAATGTTAAAGTTGAGAGTAATGGGG CAACCGAACAGAAAATTGCTTCACAGGATGCGACTAATATGCAACCGGACCACAGAGTGGGATCTCAAGGAGCCAAGGTGAAAGTTGGTGAAGCTGATGC GGAGGAAAATTGTTCAGCTGCAGCAGATGCTTCTACAGTAAGTGAAAATAATGGGGGGAAGGTAGTATTTGATCTGAATGAGGGACTTAACGGTGATGAT GGGAAGTATCTGGAGCCACCCAGTTCAAAAGTTCCCAGAACTTCTGCTTCTCCTCTTCAACTGCTCTCGGGGCCACTACTCAGCCACGTCTCCGCTTTTC CCTTTTCGTTGTTCTTCGCGCACCACCGAGTTCCACTGCCTCTGCATCATCCAAAGATCCAAACTTGTCGCAGAAAGATGGTTGCCGTGGAGCCTAACCT GGACCAGTTCTACGAGGAGAAGAAGCGCGTTAGAAACCCTTTCGTCCCCATAGGCGCACTTTTGACGGCTGGAGTGCTGACGGCAGGACTGGTCAGCTTC AGAAGAGGGAATTCGCAGCTGGGGCAGAAGTTGATGAGAGCTAGAGTGGTAGTACAAGGAGCAACCGTGGCGCTTATGGTTGGGACTGCATTCTACTATG AACAGAATCCCTGGAAGAAGTCTGACTGA
AA sequence Show only first row Show all	>Lus10042137 pacid=23153654 polypeptide=Lus10042137 locus=Lus10042137.g ID=Lus10042137.BGIv1.0 annot-version=v1.0 MHGREGEERQKARHMWTDPTPANLVVTGDGSLSPPVLNSFYKDGRKICVGDCALFKPPEESPPYIGIIHSVTASEDNNFILGVNWLYRPAELTLVKGIQL DAAPNEIFYSFHKDAASAASLLHPCKVSFLPKGAELPSGISSFVCRRVYDINKKCLWWLTDQDYIDEHQEEIKEVLSKTRIDMHTTVQSGGHSPKPMNGP TATSQSKPGSDSVQNSGSSFPSQDDGDSANSRAENNWKSEITKMKEKGGLVDYYAVEKLVQLMLSDRNEKKIDLVGRSMMASIVAATDKFDCLIWFVKHR GVPVFDEWIQEAHKGKVGDGSGPKDSDKSVEEFLLVLLRALDKLPVDLHALQTCNIGKSVNHLRTHKSLEIQKKARSLVDTWKKRVEAEMDAKSGSNHGV HWATRSRLPDASHGGNRHTGVASEVALKSSTSQLAALKTAPAKLVSAEAMTKSVSGSPGSNKSTPVPVPGGSTAKEGQARYGSGAGGSDASPTMVRDEKT SSSSQSHNNSQTGSGDQTKAAGFSGKEDTRSSGSVTPGRVASGSSRHRKSNNGFLGQGGTIVQRETGSGRNSPLRRNSSSEKVSQISLTSDKAVDVPAVE ANNHKIVVKIPNRGRSPGQSASGGGGSIDDPSAVHIGSCSPAVSDMQDQLDHNLKDKADASRANVVSDVNTESWQSNDFKDVLTGSDEGDVSPTTDLDDE RSRPSEDAKKLPEVYKSASLPASNEYQLAKLNDASFSSINALIESCVKHSDANASTSAADEVGMNLLASVAAGEMSKSDVAPPASPPQLQSHPDGNLADE HGRSGDNIVGESHNKGGGVDSLEVEVDGASRDKSPMQLGHDPISSAVEAQQTRETGKEDKMNGMLSCSSAQLPAVVAGEKNLGGVVKQPEKEDVSSTLNG DATSDIKEKPLPSFSTEPKVNVVGGDVKVGGVQSSSSQLGSSAVGENEKLRNEELKVGLLDEKPPAVIHPDSGGRTDVQMQQVVSKCHELKNEDVDETGG RKLSPAKQKAGQLSDGTATGLKEKPNVKVESNGATEQKIASQDATNMQPDHRVGSQGAKVKVGEADAEENCSAAADASTVSENNGGKVVFDLNEGLNGDD GKYLEPPSSKVPRTSASPLQLLSGPLLSHVSAFPFSLFFAHHRVPLPLHHPKIQTCRRKMVAVEPNLDQFYEEKKRVRNPFVPIGALLTAGVLTAGLVSF RRGNSQLGQKLMRARVVVQGATVALMVGTAFYYEQNPWKKSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	0	1
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	1.0	0.9551
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	2.4	0.9471
AT1G79090			unknown protein		Lus10031210 [exp]	2.8	0.9211
AT4G32620			Enhancer of polycomb-like tran...		Lus10021959 [exp]	3.2	0.9498
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017490 [exp]	3.7	0.9221
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	4.2	0.9140
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	9.2	0.8950
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	9.5	0.9202
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	10.8	0.8984
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	12.0	0.9164

Compare expression of checked genes

Lus10042137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.