Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50090 130 / 8e-39 unknown protein AT1G60010 116 / 5e-33 unknown protein AT5G62900 115 / 7e-33 unknown protein AT1G10530 105 / 9e-29 unknown protein AT5G67620 90 / 1e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004229 [exp] 259 / 4e-89 AT5G50090 150 / 1e-46 unknown protein Lus10034124 [exp] 136 / 1e-40 AT5G50090 147 / 3e-45 unknown protein Lus10043461 [exp] 136 / 1e-40 AT5G50090 146 / 7e-45 unknown protein Lus10029193 [exp] 123 / 1e-35 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 122 / 2e-35 AT1G60010 177 / 3e-57 unknown protein Lus10030651 [exp] 108 / 3e-30 AT1G60010 171 / 4e-55 unknown protein Lus10030835 [exp] 102 / 6e-28 AT1G60010 150 / 2e-47 unknown protein Lus10019264 [exp] 81 / 5e-19 AT5G67620 163 / 5e-51 unknown protein Lus10011549 [exp] 42 / 0.0002 AT5G67620 90 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072501 [exp] 142 / 6e-43 AT5G50090 152 / 4e-47 unknown protein Potri.012G077300 [exp] 133 / 2e-39 AT5G50090 168 / 1e-53 unknown protein Potri.008G146500 [exp] 119 / 2e-33 AT1G60010 189 / 3e-61 unknown protein Potri.010G095400 [exp] 109 / 3e-30 AT1G60010 187 / 5e-61 unknown protein Potri.007G005600 [exp] 97 / 2e-25 AT5G67620 184 / 7e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042139 pacid=23153849 polypeptide=Lus10042139 locus=Lus10042139.g ID=Lus10042139.BGIv1.0 annot-version=v1.0 ATGGGGAATTGTCAAGCCGTCGACGCAGCAACGCTGGTGATCCAGCACCCCAACGGCAAGGTCGACAATCTCTATTGGTCCGTAACCGCCGCCGAAGTCA TGAAAGCCAACCCCGGCCACTGCGTCGCCCTCCTCCTCTCCACCACCTTGTATCCTCCTCCTCCTCCCCCCACCGCCGCCACCGCCACCTCTCAACAACA CCGCCCTCATCCTACTTCCTCCCGACCGGTTAGGCTGACGAGGATTAAGCTCCTCCGCCCCACGGACACGCTCACCCTCGGCCACGTTTACCGCCTCATC ACAAACCAAGAGGTAATGAAAGGATTGTTGGCGAAGAAGCAATCGAAGCCGCAAATCCAAGATAATCATCATCATCATCCTATAGTAGAACAGAGTAGTA GTAGTAGTTGTTCCTCTACTGAGCCGTTGTTAAAGTCGGAAGATTCATCTAGAAGATCTCTAAAGAAGAAGGAGAAGAACAGAACAGCATCATGGCAGCC ATCGCTACACAGCATCTTGGAATCAGCCGGAGGAGGAGGAAGCAGTGGTATTGGAATCTGA
AA sequence Show only first row Show all	>Lus10042139 pacid=23153849 polypeptide=Lus10042139 locus=Lus10042139.g ID=Lus10042139.BGIv1.0 annot-version=v1.0 MGNCQAVDAATLVIQHPNGKVDNLYWSVTAAEVMKANPGHCVALLLSTTLYPPPPPPTAATATSQQHRPHPTSSRPVRLTRIKLLRPTDTLTLGHVYRLI TNQEVMKGLLAKKQSKPQIQDNHHHHPIVEQSSSSSCSSTEPLLKSEDSSRRSLKKKEKNRTASWQPSLHSILESAGGGGSSGIGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50090			unknown protein		Lus10042139 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	5.0	0.7878
AT4G23020			unknown protein		Lus10006336 [exp]	5.7	0.7776
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10043137 [exp]	8.0	0.7072
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	8.1	0.7811
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	12.8	0.7477
AT3G54880			unknown protein		Lus10038690 [exp]	15.3	0.6558
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	17.3	0.7362
AT4G18593			dual specificity protein phosp...		Lus10001888 [exp]	17.9	0.7156
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	19.7	0.7162
AT3G49550			unknown protein		Lus10000077 [exp]	24.7	0.6222

Compare expression of checked genes

Lus10042139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.