Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62575 110 / 3e-32 SDH7B, SDH7 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein AT3G47833 103 / 2e-29 SDH7A, SDH7 succinate dehydrogenase 7A, succinate dehydrogenase 7, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004231 [exp] 115 / 4e-34 AT5G62575 80 / 3e-21 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein Lus10034122 [exp] 94 / 6e-25 AT5G62575 83 / 1e-21 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072100 [exp] 118 / 3e-35 AT5G62575 131 / 4e-41 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein Potri.012G077101 [exp] 116 / 2e-34 AT5G62575 131 / 2e-41 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042141 pacid=23153529 polypeptide=Lus10042141 locus=Lus10042141.g ID=Lus10042141.BGIv1.0 annot-version=v1.0 ATGATGTTAAGAGTTGAAGTCACCGGCGATTTTCCGATTTCCGACCAAGTTAGTGATCCGAAGCAGCACGTACGATATGGCGTTCTTCCTGCAGAACTCA TTGCTTTCTTCTCACTTCCGATCCCGTTCTCAGGTACCGCCGTACCAGTCTCTAGTTCTTTCTCGGTTGACGATTTCAAGCTAAAACCACTCACGCCGGC TATTTCTTCTTTGTCTCGGCAATCTTGCCGATCAAAGGAGGCGCTTTCGATATCCCGTCGCGGATTCCACGTCGAGATGGGGCAGCGGGAGAAAGCCCTT CTGGCAGAGGATCCGGCTATCAATAGATTCAAATCCTACAGGAAGGGTGTGTCCAAAATTAACAAAATTGGAGATTTTCTCACAGTTGTTGTCGTAGCAG GTTGCTGCTATGAGATCTACGTGAAAGCAACAATGCGCGAAGCAGCACGCAAACAGACTGGTGCAAGTGCTTAA
AA sequence Show only first row Show all	>Lus10042141 pacid=23153529 polypeptide=Lus10042141 locus=Lus10042141.g ID=Lus10042141.BGIv1.0 annot-version=v1.0 MMLRVEVTGDFPISDQVSDPKQHVRYGVLPAELIAFFSLPIPFSGTAVPVSSSFSVDDFKLKPLTPAISSLSRQSCRSKEALSISRRGFHVEMGQREKAL LAEDPAINRFKSYRKGVSKINKIGDFLTVVVVAGCCYEIYVKATMREAARKQTGASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10042141 [exp]	0	1
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	7.3	0.7266
AT4G01897			unknown protein		Lus10038061 [exp]	12.3	0.6822
AT5G25360			unknown protein		Lus10002164 [exp]	12.7	0.6804
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	16.7	0.6417
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10032612 [exp]	27.0	0.5932
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10014256 [exp]	32.6	0.6562
AT1G65295			unknown protein		Lus10020197 [exp]	33.3	0.6775
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10015840 [exp]	39.8	0.6265
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	41.6	0.6512
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	44.5	0.6319

Compare expression of checked genes

Lus10042141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.