Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50100 236 / 2e-78 Putative thiol-disulphide oxidoreductase DCC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004232 [exp] 416 / 8e-149 AT5G50100 239 / 9e-80 Putative thiol-disulphide oxidoreductase DCC (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072000 [exp] 261 / 2e-88 AT5G50100 261 / 4e-89 Putative thiol-disulphide oxidoreductase DCC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04134 [flax] [poplar] DUF393 Protein of unknown function, DUF393
Representative CDS sequence Show only first row Show all	>Lus10042142 pacid=23153602 polypeptide=Lus10042142 locus=Lus10042142.g ID=Lus10042142.BGIv1.0 annot-version=v1.0 ATGGATGGCTTATTCAGAAATCCTCCATCTTCTTCCCAACCTCTTAAATCCATCAAGATCATGGCGTCGGCGATGAAGATGAAGACCGCTGCCACCATCG CTTGCAATGCCCTAGCCCGTCATACCAAATATGTTGCGCAGCCATCGAATCTCCCAACGCCTCGCGTTCTCAGAGCAACATTTCATCAACAGCGCTCCAT TGCACCTTCACGCTCCCCTGTAGAACCCGTATTCCAATCTCATGGAAGATCGTTAAGATGTGGAACTCGTGGTATACGCAATAGGGCAACGCCGATGATG GAGTCCGTGACGGATGAGGAGAAAGGGAATGGCGGCGAGAATTCGCCCGTTGGTTGGAAAATCAAGATGCTTTACGATGGAGACTGCCCGCTTTGCATGC GTGAGGTAGATATGCTAAGGGAGAGGAATAAGAGTTACGGGACGATCAAGTTCGTCGACATAAGCTCGGATGATTATTCTCCTCAAGAGAACCAAGGCCT GGACTATGAGACTGCGATGGGGAGGATTCATGCAGTCATGGCTGATGGAACTGTAGTTACAGACGTTGAAGCATTCAGAAGATTGTATGAACAAGTTGGT CTGGGATGGGTCTATGCAATCACCAAATACGAGCCTATCGGAAAGGTGGCTGATGCTGTCTATGGATTCTGGGCAAAATACCGACTTCAAGTCACAGGCC GACCTCCTCTAGAACAAGTGCTCGAGGCACGCAAGAAGAAGGGTGAATCGTGCAAAGATGGCACTGATTGTAAGATTTGA
AA sequence Show only first row Show all	>Lus10042142 pacid=23153602 polypeptide=Lus10042142 locus=Lus10042142.g ID=Lus10042142.BGIv1.0 annot-version=v1.0 MDGLFRNPPSSSQPLKSIKIMASAMKMKTAATIACNALARHTKYVAQPSNLPTPRVLRATFHQQRSIAPSRSPVEPVFQSHGRSLRCGTRGIRNRATPMM ESVTDEEKGNGGENSPVGWKIKMLYDGDCPLCMREVDMLRERNKSYGTIKFVDISSDDYSPQENQGLDYETAMGRIHAVMADGTVVTDVEAFRRLYEQVG LGWVYAITKYEPIGKVADAVYGFWAKYRLQVTGRPPLEQVLEARKKKGESCKDGTDCKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50100			Putative thiol-disulphide oxid...		Lus10042142 [exp]	0	1
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	3.2	0.8981
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	3.5	0.9104
AT5G50100			Putative thiol-disulphide oxid...		Lus10004232 [exp]	3.5	0.8949
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	3.5	0.8938
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10024989 [exp]	5.5	0.8769
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	7.5	0.8489
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	11.4	0.8621
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	12.3	0.8323
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	12.3	0.8664
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	15.9	0.8766

Compare expression of checked genes

Lus10042142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.