Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27520 882 / 0 Glycosyl hydrolase family 47 protein (.1) AT5G43710 419 / 8e-140 Glycosyl hydrolase family 47 protein (.1) AT1G51590 194 / 8e-55 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 191 / 1e-53 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 112 / 8e-26 MNS3 alpha-mannosidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004233 [exp] 652 / 0 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 419 / 4e-139 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 402 / 1e-133 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10034820 [exp] 204 / 3e-58 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 198 / 6e-56 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10035727 [exp] 197 / 8e-56 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 186 / 2e-51 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 174 / 7e-47 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 110 / 9e-26 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071400 [exp] 957 / 0 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 655 / 0 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 421 / 6e-141 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.018G141100 [exp] 196 / 3e-55 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.008G007500 [exp] 190 / 4e-53 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 172 / 3e-46 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10042143 pacid=23153590 polypeptide=Lus10042143 locus=Lus10042143.g ID=Lus10042143.BGIv1.0 annot-version=v1.0 ATGCCGTCTCTAAGATCTGGGACGTGGGTATGTCTTCTTCTGTTGCTGCTCCTCACCTCTTCCGTTGAGTCTGATTCTCGATGGGAAGCTAAGAAGCTGC TATTGCGAGACAAAGTTCGAGCGATGTTCTATCACGCATATGAAAACTACATGACCTATGCATTTCCGCATGATGAGCTAAAGCCTATTACCAAGTCATA CACTGACTCGCTTAGTGAGCTTGGAAATCTCAAGCTTGAGCATTTGCCGCGAGATTATAACGGGTCTGCTCTTACTCTGATTGAGTCGTTATCCAGCCTT GTTATAATGGGAAACAACACGGAGTTTGAAAGGGCGGTTCATTGGCTCTCGGAGAATTTGTCGTTTGATGTTGATGCAAGGGTGAATCTTTTTGAGTGCA ATATAAGAGTTCTCGGAGGGCTTGTTTCTTCTCATATTCTCGCCACTGACTCCAAGAATCGGTTGATTCAAGGTTCTTACGATAATCAATTGCTTACTCT GGCTGAAGATTTGGGCCGGCGTTTCTTACCGGCATTTGATACACCAACTGGTTTGCCATATGCCTGGATCAACTTAAAGTATGGAGTCATGGCGGGTGAA ACTGCCGAAACTAGCACTTCAGGATGTGGTTCTCTAATACTTGAAATGGGAGCCTTGTCAAGATTAACCGGTGACCCAAGATATGAATATGCAGCGTTAC GTGCTCTTAGGAAGTTGTGGAGTATGCGTAGTTCCCTGAACTTATTTGGAACGACATTGGATGTGACAACTGGACAATGGATTGAACATTCGTCTGGAAT TGGGGCTGGTGTTGATTCTTTCTATGAGTATCTAGTCAAGGCTCACATCCTTTTTGGAAAAGATGACTATTGGAGAATGTTCCAGACTGCTTATCAAGCT GTGCAGAAGTACTTCAGACATGGCCCATGGTACCATGAAGCTGATATGAGAAGTGGAACAGCGACTTACTGGCAGTTGACTAGCCTCCAAGCATTTTGGC CTGGTTTACAGGCAAGCACTGCAAATTCCTCGCACCGAGAATTCTTTTCAGTGTGGGAAAAGTTTGGGGTACTTCCGGAAAGGTATTTGCTGGACTATAA AATTGTGCATCCTACAGAGAAGTACTATCCGTTGCGTCCTGAATTGGCCGAGTCTACATTTTACCTATATCACGCTACGAAAGATCCTTGGTATCTAGAG GTGGGGGAAGCAATGGTCAACTCTCTGAACTTATACACCAAAGTTGAGGGAGGATTTGCTAGCATCAAAGATGTGACAACCATGCAAAGAGAAGATCACC AACATAGTTTCTTTCTCGCCGAAACATGCAAGTATCTGTATCTTCTCTTTGATGATTCATTCTTAGCTGATAGAAACTATGTATTTACTACCGAGGGCCA CCCTCTACCGGTGCGAAGTGATTGGCATGATCGGCTTCCAGAAGCATACATTCCATCGAATTGGACTTACATCAAGAGTCCGGTATCAACGCACCGTGCT AGTGCAATGACTCAGCAAGTCTGTCCTGCAACAAGCTTGAATCTTGGAGAGGGCCACCAGCCGATCGAGAGTGTCTGCCACATCATCGACACTCGCAGCG ATCACAGGTGTCTGATGGACGAGGAATGTGGGGTCGACGCGACTAGTTGCAGAAGAAGATCGTGTAGCATGTCTGGATACTGTGGATTATGGCTGCGGCC ATAA
AA sequence Show only first row Show all	>Lus10042143 pacid=23153590 polypeptide=Lus10042143 locus=Lus10042143.g ID=Lus10042143.BGIv1.0 annot-version=v1.0 MPSLRSGTWVCLLLLLLLTSSVESDSRWEAKKLLLRDKVRAMFYHAYENYMTYAFPHDELKPITKSYTDSLSELGNLKLEHLPRDYNGSALTLIESLSSL VIMGNNTEFERAVHWLSENLSFDVDARVNLFECNIRVLGGLVSSHILATDSKNRLIQGSYDNQLLTLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMAGE TAETSTSGCGSLILEMGALSRLTGDPRYEYAALRALRKLWSMRSSLNLFGTTLDVTTGQWIEHSSGIGAGVDSFYEYLVKAHILFGKDDYWRMFQTAYQA VQKYFRHGPWYHEADMRSGTATYWQLTSLQAFWPGLQASTANSSHREFFSVWEKFGVLPERYLLDYKIVHPTEKYYPLRPELAESTFYLYHATKDPWYLE VGEAMVNSLNLYTKVEGGFASIKDVTTMQREDHQHSFFLAETCKYLYLLFDDSFLADRNYVFTTEGHPLPVRSDWHDRLPEAYIPSNWTYIKSPVSTHRA SAMTQQVCPATSLNLGEGHQPIESVCHIIDTRSDHRCLMDEECGVDATSCRRRSCSMSGYCGLWLRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	0	1
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	5.0	0.8604
AT5G46560			unknown protein		Lus10011046 [exp]	7.5	0.8457
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	11.0	0.8526
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	12.4	0.8237
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	18.0	0.8598
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	22.6	0.8272
AT2G14255			Ankyrin repeat family protein ...		Lus10020505 [exp]	23.0	0.8130
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	24.0	0.7569
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	24.0	0.8214
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	27.2	0.8257

Compare expression of checked genes

Lus10042143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.