Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24110 383 / 2e-133 Peroxidase superfamily protein (.1) AT5G47000 379 / 7e-132 Peroxidase superfamily protein (.1) AT4G17690 375 / 2e-130 Peroxidase superfamily protein (.1) AT3G28200 369 / 4e-128 Peroxidase superfamily protein (.1) AT5G40150 366 / 9e-127 Peroxidase superfamily protein (.1) AT5G14130 282 / 8e-94 Peroxidase superfamily protein (.1) AT2G18980 264 / 1e-86 Peroxidase superfamily protein (.1) AT4G37530 260 / 2e-85 Peroxidase superfamily protein (.1.2) AT4G37520 259 / 8e-85 Peroxidase superfamily protein (.1.2) AT3G49960 250 / 3e-81 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004234 [exp] 625 / 0 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10010716 [exp] 416 / 3e-146 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10039445 [exp] 367 / 3e-127 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10029201 [exp] 304 / 1e-103 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) Lus10011079 [exp] 270 / 7e-89 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10012540 [exp] 254 / 8e-83 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10001442 [exp] 251 / 1e-81 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10031664 [exp] 248 / 2e-80 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10032035 [exp] 245 / 2e-79 AT5G67400 394 / 3e-138 root hair specific 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036100 [exp] 420 / 5e-148 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 417 / 4e-147 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 358 / 9e-124 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 329 / 2e-112 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 270 / 1e-88 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.007G053400 [exp] 268 / 3e-88 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.018G089900 [exp] 263 / 2e-86 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.017G064100 [exp] 263 / 3e-86 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 258 / 2e-84 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.011G062300 [exp] 256 / 1e-82 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10042144 pacid=23153666 polypeptide=Lus10042144 locus=Lus10042144.g ID=Lus10042144.BGIv1.0 annot-version=v1.0 ATGGCGACTCATCACCAATATCGTCATTCCATCATCCTCCTATCAATCACCATCTTCCTCTCCATACCTATCCTCTCCAATTCCCAGCTCTCCCTCGACT ACTACAAGACCACTTGCCCCGAATTCGACAGGATCGTCAGCGAAACCGTCACCACCAAACAGATCTCCAACCCCACCACAGCCGCCGCCTCTCTCCGCAT CTTCTTCCATGACTGCATGGTCGACGGCTGCGATGCTTCCGTCCTCGTCGCCCCCAACCACTTCAACAAAGTCGAGCGCGACAACGAACTGGATCAGGAC TTGCCTGGTGACGGCTTTGATGTCGTCACCCGCGTCAAGACCGCCTTGGAGCTGGCATGCCCCAAGACGGTCTCGTGCGCTGACATCCTCGCGGAGGTAG CACGTGACCTCGTTGTAATGGTTGGCGGCCCCAACTATCCTGTCTTGTTGGGCCGGAAAGACAGCCTGGTCTCTCTATCCGACAACGTAGTACCCAACCT CCCATTGCCTAACATGACCAATGATCGGATCATCAGCATGTTCGAGTCTAAAGGGTTCACGATCCAGGACATGGTCGCCTTAGTCGGAGCCCACACTATA GGGTTCTCACATTGTAAGCAGTTTGCCAAAAGGATTTACAACTTTAGCAAAGAGGTGGAGACCGATCCGGAGATGAACCCGACATATGCTGCGGGTTTGA AGAAGTTTTGTGCTAATTATACAAATGATCCCACAATGTCGGCTTTTAATGATCTGTACACTCCGGGAAAGTTCGACAACATGTATTACCAAAACCTGCT TAAAGGAATGGGGCTTTTGGCATCGGATCAGTTGCTAATGGATGATCCAAGGACGAAGAAGTTTGTAGAGCTCTATGCAGCTAACCAAACTGCTTTTTTT GATGATTTCTCAAAAGGTATGGAGAAGTTAAGCGTATTGGATGTTAAGACTGGGAATGAAGGTGATGTTAGGAGTATGTGTGACGAATTTAACACTGTCA AGTCTTAA
AA sequence Show only first row Show all	>Lus10042144 pacid=23153666 polypeptide=Lus10042144 locus=Lus10042144.g ID=Lus10042144.BGIv1.0 annot-version=v1.0 MATHHQYRHSIILLSITIFLSIPILSNSQLSLDYYKTTCPEFDRIVSETVTTKQISNPTTAAASLRIFFHDCMVDGCDASVLVAPNHFNKVERDNELDQD LPGDGFDVVTRVKTALELACPKTVSCADILAEVARDLVVMVGGPNYPVLLGRKDSLVSLSDNVVPNLPLPNMTNDRIISMFESKGFTIQDMVALVGAHTI GFSHCKQFAKRIYNFSKEVETDPEMNPTYAAGLKKFCANYTNDPTMSAFNDLYTPGKFDNMYYQNLLKGMGLLASDQLLMDDPRTKKFVELYAANQTAFF DDFSKGMEKLSVLDVKTGNEGDVRSMCDEFNTVKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24110			Peroxidase superfamily protein...		Lus10042144 [exp]	0	1
AT1G02700			unknown protein		Lus10036329 [exp]	7.9	0.7814
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	10.2	0.7891
					Lus10013093 [exp]	16.4	0.7530
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	17.1	0.7881
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031709 [exp]	25.8	0.7701
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	33.8	0.7687
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	41.7	0.7581
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10035706 [exp]	45.9	0.7077
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	46.7	0.7539
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	50.7	0.7431

Compare expression of checked genes

Lus10042144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.