Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 988 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 981 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 762 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G64410 758 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 752 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G53520 747 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 742 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53510 726 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 716 / 0 ATOPT3 oligopeptide transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031978 [exp] 1053 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1047 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 1045 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 1044 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 993 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 974 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 944 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 932 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 929 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 1052 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1043 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 943 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 846 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.007G056900 [exp] 777 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.009G079500 [exp] 776 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.003G145500 [exp] 770 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 764 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.005G150400 [exp] 762 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 757 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10042147 pacid=23153828 polypeptide=Lus10042147 locus=Lus10042147.g ID=Lus10042147.BGIv1.0 annot-version=v1.0 ATGGTGGTGTCTAGTGACAATGCCGCCGCCATCGAGGAAGTGAACGACAACCCAATCGAGCAAGTCCGCCTGACTGTTCCCATCACCGACGACCCAACCC AACCGGCGCTTACATTCCGGACATGGTTCCTCGGGATCATATCCTGCGCGCTTCTGGCGTTCGTCAACCAGTTCTTCGGTTACCGTCAGAACCAGCTCTA CGTCGGTTCGGTCTCTGTTCAAATCGTGGTTCTCCCGTTGGGTAAACTGATGGCGGCTACTCTCCCGACGAGGAAGTTCAGAATCATGGGCCGGGCTTTT TCCTTAAACCCAGGCCCATTCAGTTTGAAGGAGCATGCACTGATCACAATCCTCGCTAGCTGCGGAGCTAGCGGGGTTTATGCCGTCAACATCATCACCA TCATCAAGGCGTTCTACAAGCGGGATCTCCATCCAGGAGCTGCATTCCTCCTCGCGCAGACGACTCAGCTTCTCGGATATGGATGGGCGGGGCTTTTCAG GAAGATCCTGGTGGATTCTCCGTTCATGTGGTGGCCATCCAATCTGGTTCAGGTTTCTCTCTTCAGGGCTCTGCACGAGAAGGAGAAGAGGGAGAAAGGA GGCCACACCAGGCTTCAGTTCTTCACGGTTGTTTTCATTTGCAGCTTTTCTTACTATATACTTCCAGGATATCTGATGCCTTCGATTTCGACGATCTCTG TTATCTGCCTCTTGTGGAGTCGGTCTGTGATGGCGCAGCAGCTTGGTTCGGGGCTTAACGGGCTTGGACTTGCGAGTTTCGGGCTCGATTGGGCTACGGT TGCCAGTTTTCTGGGGAGTCCGATTGCGAATCCTTTGTATGCCATATTGAATTCGTTTGCTGGATTTGTGCTCTTGATTTATGTGGTGCTGCCGATTGCT TACTGGTCGAATTTGCACAATGCGAAGCGGTTCCCGATCTTCTCTTCGAATACGTTTGATGGTTTTGGTAAACCTTATAACATTACGAGGATTCTTAATG TCAAGGATTTCCAGATTGACACGGAGGCTTATGATAGCTACAGCAAAGTCAATCTTTCCATCTTCTTTGCCTTTGCTTATGGCCTCAGCTTTGCTACCTT GACTGCCACCATTTCACATGTTGCTCTCTTTGATGGAAAAGTGATCTTGGATTTGTTCAAGAAGGCAACAGCTGCAAGCAAAGCCCAGTTTGCAGACGTG CACACGAGAATGATGAAGAGGAACTATGAGGCGGTTCCACAGTGGTGGTTTCTTGTGGTATTGGGATTCAGTTTTTGTCTGGCCTTGTTTGCTGTTGAAG GTTTCGGTAAACAGCTCCAGCTTCCCTGGTGGGGACTCGTCTTTGCATGTGCCCTTGCTATGGTTTCCACTCTACCTATTGGCATAGTTCAGGCCACCAC GAACACTCAAATCGGACTCAATGTCATCACGGAGCTAATAATAGGCTATGCTTACCCTGGGAAGCCCCTAGCCAATGTTGCTTTCAAAACTTACGGCTAC ATCAGCATGTCTCAGGCTCTGTCGTTCGTGCAAGACTTCAAACTCGGCCACTACATGAAAATTCCTCCCAAATCCATGTTCTTTGTCCAACTGGTGGGTA CAATAGTGGCATCGACTGTTTCCTTCGCTACAGCATGGTGGATACTCTCCACCATACCGAACGTGTGCGACTTGGACGTTCTTCCAGAAGGTAGTCCATG GACATGCCCCGGATCCGATGTGTTCTACAGCGCTTCCATCATCTGGGGAGTAGTGTCCCCACGCAGAATGTTCGGAGACCTGGGAATCTACAAAGAACAG TACTGGTTCTTCCTTATCGGTCTGCTCGCTCCAGTTCCCGTCTGGCTGCTCTCTCGTAAATTCCCGGAGAAGCAGTGGATCAAGCTGATTCACATGCCCC TCATCCTCGGAGCTTCGGCCAGCATGCCTCCGGCTAAGGCTGTGCATTACTGGACTTGGGCGGCAGTTGGGATATTCTTCAATTACTTCATCTACAACAG GCACAAAGGGTGGTGGGCTAGGCATGCTTATATATTCTCTGCTGCAATGGATGCTGGCGTGGCCTTCATGGGTATTCTTCTGTTTTTCGCTGTCAACTCT CATGACGTGTATGGTCCTGATTGGTGGGGGCTCGAAGCATCGGATCATTGCACGTTGGCCAAGTGTCCCACTGCTCCTGGCGTTGTGGTCAAGGGTTGCC CTGCTGTTGCCTGA
AA sequence Show only first row Show all	>Lus10042147 pacid=23153828 polypeptide=Lus10042147 locus=Lus10042147.g ID=Lus10042147.BGIv1.0 annot-version=v1.0 MVVSSDNAAAIEEVNDNPIEQVRLTVPITDDPTQPALTFRTWFLGIISCALLAFVNQFFGYRQNQLYVGSVSVQIVVLPLGKLMAATLPTRKFRIMGRAF SLNPGPFSLKEHALITILASCGASGVYAVNIITIIKAFYKRDLHPGAAFLLAQTTQLLGYGWAGLFRKILVDSPFMWWPSNLVQVSLFRALHEKEKREKG GHTRLQFFTVVFICSFSYYILPGYLMPSISTISVICLLWSRSVMAQQLGSGLNGLGLASFGLDWATVASFLGSPIANPLYAILNSFAGFVLLIYVVLPIA YWSNLHNAKRFPIFSSNTFDGFGKPYNITRILNVKDFQIDTEAYDSYSKVNLSIFFAFAYGLSFATLTATISHVALFDGKVILDLFKKATAASKAQFADV HTRMMKRNYEAVPQWWFLVVLGFSFCLALFAVEGFGKQLQLPWWGLVFACALAMVSTLPIGIVQATTNTQIGLNVITELIIGYAYPGKPLANVAFKTYGY ISMSQALSFVQDFKLGHYMKIPPKSMFFVQLVGTIVASTVSFATAWWILSTIPNVCDLDVLPEGSPWTCPGSDVFYSASIIWGVVSPRRMFGDLGIYKEQ YWFFLIGLLAPVPVWLLSRKFPEKQWIKLIHMPLILGASASMPPAKAVHYWTWAAVGIFFNYFIYNRHKGWWARHAYIFSAAMDAGVAFMGILLFFAVNS HDVYGPDWWGLEASDHCTLAKCPTAPGVVVKGCPAVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10042147 [exp]	0	1
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	15.4	0.8987
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	17.2	0.8941
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	22.8	0.8800
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	24.9	0.8789
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	28.2	0.8713
AT3G12870			unknown protein		Lus10031198 [exp]	29.2	0.8781
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	40.2	0.8540
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	44.2	0.8625
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034846 [exp]	45.8	0.8503
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	50.8	0.8030

Compare expression of checked genes

Lus10042147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.