Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74920 730 / 0 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 715 / 0 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 321 / 6e-105 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 303 / 2e-97 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 293 / 1e-93 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G79440 265 / 9e-83 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 162 / 4e-44 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G14170 154 / 1e-41 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT2G24270 153 / 4e-41 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G44170 130 / 6e-33 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042149 [exp] 766 / 0 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10034115 [exp] 731 / 0 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10043470 [exp] 724 / 0 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 588 / 0 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004238 [exp] 459 / 8e-162 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023625 [exp] 298 / 6e-96 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 294 / 2e-94 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 294 / 6e-94 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 290 / 3e-92 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070600 [exp] 753 / 0 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 748 / 0 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G078700 [exp] 298 / 8e-96 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 296 / 5e-95 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 293 / 2e-93 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 287 / 1e-91 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.010G174000 [exp] 263 / 2e-82 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 169 / 3e-46 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.006G186800 [exp] 161 / 5e-44 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.001G283100 [exp] 160 / 2e-43 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10042148 pacid=23153974 polypeptide=Lus10042148 locus=Lus10042148.g ID=Lus10042148.BGIv1.0 annot-version=v1.0 ATGGCAGCAATTTCAATCCCGACTAGGCAGCTCTTCATCGACGGACAGTGGAAGCAGCCAGTTCTCAACAAACGCATCCCAGTCATCAACCCTTCCACCG AAGAGATCATCGGTGATATCCCTGCTGCTACCGCCGAAGATGTGGAGATCGCAGTGGAAGCTGCCCAGAAAGCTTTCAGCAGAAACCGAGGCAAAGATTG GGCTTTCGCATCTGCTGCTTCTCGTGCTAAGTACTTGCGTGCTATTGCTGCTAAGATAACAGAGAAGAAGCCTTTGTTAGCCAAACTTGAATCGATTGAT TGTGGGAAGCCTTACGATGAAGCAGCATGGGATATGGACGATGTTGCCGGATGCTTCGAGTACTATGCTGACCTGGCAGAAGGTCTAGACTCAAAGCAGC GGGCTCCTGTTTCCCTCCCCATGGATACATTCACCAGCTATGTTCTTAACGAGCCTATTGGAGTTGTTGCATTGATTACTCCCTGGAATTACCCTTTGTT GATGGCCACGTGGAAAGTGGCTCCTGCTTTGGCTGCTGGGTGCACTGCAATTCTGAAGCCATCTGAGCTGTCATCTCTTACCTGTTTGGAACTTGCTGAG ATTTGTCAAGAGGTTGGTCTTCCTAGTGGTGTCCTCAACATTCTAACTGGATTGGGTCCTGAAGCTGGTGCTCCTTTGGCCGCGCATCCTAATGTTGACA AGATTGCATTCACTGGAAGCTCGGGCACTGGTAGCCGTATAATGACTGCTGCAGCAAAATTAGTCAAACCTGTCTCTATGGAGCTTGGAGGGAAGAGCCC AATTATTGTATTTGAGGATGTAGACCTTGACAAAGATCCTTTGGAAGAAGGCTGTAGGCTTGGTCCAGTTGTTAGTGCAGGACAGTATGAGAAAATTATG AAATTCATCTCAACTGCTAAAAGTGAAGGTGCCACTATTTTAACAGGTGGCGGTCGTCCAGAGCATTTACAAAAGGGATTCTTCGTAGAGCCTACCATTA TAACTGATGTGACCACCTCCATGGAAATCTGGAAAGAGGAAGTCTTTGGGCCTGTTCTATGTGTCAAAACATTTAGCACTGAAGAGGAAGCCATTGACTT GGCTAATGACACCCACTATGGCTTAGCAGCTGCTGTCATCTCCAACGACGAGGAGAGGTGTGATCGTGTAAGCAAGGCTTTCCGGTCAGGTATCGTGTGG ATTAATTGCTCACAGCCATGTTTCTGTCAAGCACCTTGGGGAGGCCTCAAGCGCAGCGGATTTGGACGCGAAAATGGAGAATGGGGACTGAACAACTACT TGAGCGTGAAGCAAGTAACTAAGTATATCTCCAGTGATCCATGGGGCTGGTACCAATCTCCAGCAAAGCAGTAA
AA sequence Show only first row Show all	>Lus10042148 pacid=23153974 polypeptide=Lus10042148 locus=Lus10042148.g ID=Lus10042148.BGIv1.0 annot-version=v1.0 MAAISIPTRQLFIDGQWKQPVLNKRIPVINPSTEEIIGDIPAATAEDVEIAVEAAQKAFSRNRGKDWAFASAASRAKYLRAIAAKITEKKPLLAKLESID CGKPYDEAAWDMDDVAGCFEYYADLAEGLDSKQRAPVSLPMDTFTSYVLNEPIGVVALITPWNYPLLMATWKVAPALAAGCTAILKPSELSSLTCLELAE ICQEVGLPSGVLNILTGLGPEAGAPLAAHPNVDKIAFTGSSGTGSRIMTAAAKLVKPVSMELGGKSPIIVFEDVDLDKDPLEEGCRLGPVVSAGQYEKIM KFISTAKSEGATILTGGGRPEHLQKGFFVEPTIITDVTTSMEIWKEEVFGPVLCVKTFSTEEEAIDLANDTHYGLAAAVISNDEERCDRVSKAFRSGIVW INCSQPCFCQAPWGGLKRSGFGRENGEWGLNNYLSVKQVTKYISSDPWGWYQSPAKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042148 [exp]	0	1
AT1G45688			unknown protein		Lus10029743 [exp]	8.4	0.9279
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	8.5	0.9094
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	11.9	0.9116
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	12.4	0.9064
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	12.7	0.9220
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	14.7	0.9044
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	17.8	0.9052
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	18.1	0.9040
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	18.5	0.8644
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	19.0	0.9003

Compare expression of checked genes

Lus10042148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.