Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74920 786 / 0 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 758 / 0 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 359 / 3e-119 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 332 / 5e-108 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 317 / 2e-102 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G79440 295 / 9e-94 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 194 / 2e-55 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G14170 182 / 1e-51 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT2G24270 179 / 3e-50 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 167 / 7e-46 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043470 [exp] 774 / 0 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10034115 [exp] 771 / 0 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042148 [exp] 761 / 0 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 738 / 0 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004238 [exp] 528 / 0 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023626 [exp] 321 / 1e-103 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023625 [exp] 317 / 1e-102 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 313 / 3e-101 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 314 / 5e-101 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075600 [exp] 801 / 0 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 795 / 0 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.018G075000 [exp] 323 / 4e-105 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.012G078700 [exp] 317 / 3e-102 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 316 / 1e-101 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 308 / 6e-99 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.010G174000 [exp] 305 / 1e-97 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 198 / 2e-56 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.009G078600 [exp] 192 / 7e-55 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 188 / 2e-53 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10042149 pacid=23153502 polypeptide=Lus10042149 locus=Lus10042149.g ID=Lus10042149.BGIv1.0 annot-version=v1.0 ATGGCGGGAATTCCAATTCCAACGAGGCAGCTCTTCATCGACGGGGACTGGAGGCAGCCTGTCCTCAACAAACGCATCCTCGTCATCAACCCTTCCACTG AAGAGATCATCGGTGATATCCCAGCTGCTACTGCCGAAGATGTGGAAATTTCAGTGGAAGCTGCTCAGAGAGCTTTCAATAGGAACAAAGGCAAAGATTG GGCGTTTGCCTCTGCTGCTTCTCGTGCCAAGTACTTGCGCGCCATTGCTGCTAAGATAAAAGAGAAAAAACTTCTGTTAGCAAAACTTGAGGCACTTGAT AGTGGGAAAACTTACGATGAAGCAGCAGCGGACATGGATGATGTTGCTGGATGCTTTGAGTACTATGCTGATATGGCAGAAGGTCTAGACTCGAAGCAAA GAGCTCCAGTTTCCCTTCCCATGGAAACATTCACCAGCTATGTTCTCAAGGAGCCCATTGGAGTCGTTGCAATGATCACTCCATGGAATTACCCTCTATT GATGGCTACATGGAAAGTGGCACCTGCTTTGGCTGCTGGGTGCACTGTAATTCTGAAGCCATCTGAGCTGGCATCTCTTACCTGCTTGGAGCTTGGTGAA ATTAGTCAAGAGGTTGGTCTTCCCAATGGTGTCCTCAACATTCTAACTGGGTTAGGCCCTGAAGCTGGTGCTCCTTTGGCTGCTCATCCCAACGTTGACA AGATTGCATTCACTGGAAGCTCAGCAACGGGGAGCCGTATAATGACTGCAGCAGCAAAACTAGTCAAGCCCGTCTCTATGGAGCTCGGTGGAAAGAGCCC GATCGTTGTGTTTGAGGATGTTGATCTTGATAAAGCTGCTGAATGGATCATGTTCGGATGCTTCTGCACGAGTGGACAGATCTGCAGTGCTACATCCCGT CTTATAGTACATGAAAGCATAGCATCTGAATTGCTTGACCGGCTTGTCAAATGGACAAAAAACATCAAGATATCAGATCCATTTGAAGAAGGATGTATGT TAGGTCCAGTTGTCAGTGTAGGGCAGTATGAGAAAGTTCTGAAATTCATCTCAACTGCTAAAGCTGAAGGTGCCACTATCTTAATAGGTGGCGGTCGTCC AGAGCATTTGAAGAAGGGGTACTTCATCGAACCGACCATTATAACTGAAGTGACCACCTCCATGGAGATCTGGAGAGAGGAAGTGTTTGGGCCTGTTCTA TGTGTCAAAACATTTAGCACGGAAGATGAAGCCATTGACTTGGCAAATGACACCCACTATGGATTGGGAGCTGCTGTGATCTCCAATGATGAAGAGAGGT GTGATCGTGTAAGCCAGGCTTTTCGGGCAGGAGTGGTGTGGATTAACTGCTCGCAGCCGTGTTTCATTCAAGCACCTTGGGGAGGCATCAAACGCAGTGG CTTCGGACGCGAAAACGGAGAGTGGGGACTGGACAGCTACTTGAGCGTGAAGCAAGTAACCAAGTACATCTCCAGTGATCCATGGGGCTGGTACCAATCG CCAACAAAGCAGTAA
AA sequence Show only first row Show all	>Lus10042149 pacid=23153502 polypeptide=Lus10042149 locus=Lus10042149.g ID=Lus10042149.BGIv1.0 annot-version=v1.0 MAGIPIPTRQLFIDGDWRQPVLNKRILVINPSTEEIIGDIPAATAEDVEISVEAAQRAFNRNKGKDWAFASAASRAKYLRAIAAKIKEKKLLLAKLEALD SGKTYDEAAADMDDVAGCFEYYADMAEGLDSKQRAPVSLPMETFTSYVLKEPIGVVAMITPWNYPLLMATWKVAPALAAGCTVILKPSELASLTCLELGE ISQEVGLPNGVLNILTGLGPEAGAPLAAHPNVDKIAFTGSSATGSRIMTAAAKLVKPVSMELGGKSPIVVFEDVDLDKAAEWIMFGCFCTSGQICSATSR LIVHESIASELLDRLVKWTKNIKISDPFEEGCMLGPVVSVGQYEKVLKFISTAKAEGATILIGGGRPEHLKKGYFIEPTIITEVTTSMEIWREEVFGPVL CVKTFSTEDEAIDLANDTHYGLGAAVISNDEERCDRVSQAFRAGVVWINCSQPCFIQAPWGGIKRSGFGRENGEWGLDSYLSVKQVTKYISSDPWGWYQS PTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042149 [exp]	0	1
AT4G29850			Eukaryotic protein of unknown ...		Lus10039596 [exp]	5.7	0.8131
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	7.1	0.8359
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	7.7	0.8124
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	10.7	0.7558
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	12.8	0.8105
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	15.2	0.8016
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	18.5	0.7925
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10040677 [exp]	22.3	0.7095
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	22.8	0.7575
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	23.0	0.7260

Compare expression of checked genes

Lus10042149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.