Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48120 152 / 5e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004240 [exp] 272 / 3e-89 AT3G48120 177 / 9e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070100 [exp] 176 / 2e-52 AT3G48120 161 / 8e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042150 pacid=23153689 polypeptide=Lus10042150 locus=Lus10042150.g ID=Lus10042150.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGAAAGCCGCAGCTTACTACGACGAGCTCAGCCGGAAGGGAGAAGGAGCAGCCCGCTTCAAACTAGGACTAGGCTTCTCTTCCGCTCCGG ACGGCGATCCTCCTCCTCCTCCATCAAGAGGCTCCGCCCTTCCTTCCTCATCTTCATTCCTCTCTAACTTCGTCAGAGCATCCAGCCCCGCGCAATCCTC CAAGCTCGAGAAGGAAGCGCAGGTCCAATCAGTACAGAACAAGCTGAAAAAGAAGTCGGCAAACAACGAGTCATTCTCGGCCAGGGGTTCGGATAGAAGT CACAGAGGCCGAGAGTCGAAGTGGAGTCACCGGCGTCGGTCCAGGAGTAGGGAGAGGGATAGAGGCAGAGATGTCGATAGACATTCGAGGAGACGGAGTA GGAGTAGAAGCCGAAGTAGAGAAAGATATCGAGAGAGACGTAGGAGTAAACGGAGTAGGAGTAGGAGCAGGAGTCGTTCACCGCGTAAGGAGAGAAGGTC GGATAGAAGGAGCCGTAGCCGGAGTTCATCTCCCCGCCGGGAGAGGAGGCGGTCGGAGAAGAGTAGAAGAGAAGATGTAGGTAGGGATAGAGCAGGGAAA GCGAAGAATGAAGCTGTAGACTATGCGCGTATTATTGAAGGTTATGACAAAATGACACAAGCTGAAAGAGTGAAAGCACGGATGAAGTTCCAGCTTAGTG ATACTGCTAAAAATGATACAACAAAAGGCAGCTCAGGTTGGGAAAGGTTTGAATTTGACCAGGATGCTCCACTTGATGATGAGGAAGTAGAAGCTGCGGA GGACGATACAGCAATCGTCAAGAACATTGGTCAGAGCTTTCGGTTCACTGCGGTAGAGGCAAAAAGGGAGGAGAGGGTTAAAGCAGCTCATGATGAAGCC ATGTTTGGAGCTCCAGTAGCTCGTCCAGCTTCTGATGATTCGGACAGCGAGCCTGTATTGGAGGATAAGAAGGAAACCAGTAAACCCAGCCTTTCCGCTA GTCTTTTGAGTGAGAAGGTGCTTGCAAAGCAACAAGGATCGTGGCGTGATCGTGCTCGTAAACCTTAA
AA sequence Show only first row Show all	>Lus10042150 pacid=23153689 polypeptide=Lus10042150 locus=Lus10042150.g ID=Lus10042150.BGIv1.0 annot-version=v1.0 MEEEKAAAYYDELSRKGEGAARFKLGLGFSSAPDGDPPPPPSRGSALPSSSSFLSNFVRASSPAQSSKLEKEAQVQSVQNKLKKKSANNESFSARGSDRS HRGRESKWSHRRRSRSRERDRGRDVDRHSRRRSRSRSRSRERYRERRRSKRSRSRSRSRSPRKERRSDRRSRSRSSSPRRERRRSEKSRREDVGRDRAGK AKNEAVDYARIIEGYDKMTQAERVKARMKFQLSDTAKNDTTKGSSGWERFEFDQDAPLDDEEVEAAEDDTAIVKNIGQSFRFTAVEAKREERVKAAHDEA MFGAPVARPASDDSDSEPVLEDKKETSKPSLSASLLSEKVLAKQQGSWRDRARKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48120			unknown protein		Lus10042150 [exp]	0	1
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	2.2	0.7519
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	20.2	0.7047
AT1G29220			transcriptional regulator fami...		Lus10007288 [exp]	25.6	0.6139
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	27.4	0.7067
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030898 [exp]	30.9	0.6316
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	40.0	0.6664
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	44.7	0.6394
AT4G40045			unknown protein		Lus10043427 [exp]	52.0	0.6316
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10002543 [exp]	54.3	0.6525
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	64.1	0.6422

Compare expression of checked genes

Lus10042150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.