Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48150 904 / 0 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT2G20000 125 / 7e-30 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 115 / 1e-26 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 61 / 1e-09 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56290 58 / 1e-08 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT3G51110 46 / 6e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37130 45 / 0.0001 Protein prenylyltransferase superfamily protein (.1) AT1G76630 44 / 0.0003 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G06210 44 / 0.0005 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) AT4G37460 42 / 0.001 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004242 [exp] 1189 / 0 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10012968 [exp] 122 / 7e-29 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10034164 [exp] 78 / 8e-15 AT2G39090 801 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10004779 [exp] 61 / 3e-09 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 61 / 3e-09 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 59 / 7e-09 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043419 [exp] 57 / 3e-08 AT2G39090 756 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10000471 [exp] 50 / 7e-06 AT2G06210 1293 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Lus10032883 [exp] 50 / 7e-06 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075000 [exp] 986 / 0 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.006G164000 [exp] 125 / 6e-30 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.018G086300 [exp] 124 / 9e-30 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.010G248550 [exp] 94 / 3e-23 AT3G48150 97 / 2e-25 anaphase-promoting complex subunit 8 (.1) Potri.008G215100 [exp] 74 / 2e-13 AT2G39090 752 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.010G022100 [exp] 73 / 2e-13 AT2G39090 747 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.019G025600 [exp] 64 / 3e-10 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 64 / 3e-10 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G170000 [exp] 58 / 1e-08 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G473100 [exp] 56 / 6e-08 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04049 [flax] [poplar] ANAPC8 Anaphase promoting complex subunit 8 / Cdc23 CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10042152 pacid=23153810 polypeptide=Lus10042152 locus=Lus10042152.g ID=Lus10042152.BGIv1.0 annot-version=v1.0 ATGAAATCCAACGAGAATTGTAGAAATGAACTTCGAACCGCGATTCCCCATCTCAGCGATCGTTGTCTTCACTCAGCAGCCAAATGGGCGGCGGAGCAGC TTATAGGAATCGAGCAAGACCCTGCCAAGTTCACGCCTGCGAACACCAGATTCCAGCGAGGAAGCTCCAGCATTCGACGGAGGTTTCGCACCAATGAGTT CACTTCCACTCCTTCCACCCCCATTGCTGGCGTTTCGTATGTTTCCACTCCTGTAATGGAGGAAGACGAAACAGTGGATAATGATTTCTACCTTCTGGGT AAATCTTACTTCGATTGCCGGGAGTACAGACGGGCTGCCCATGCTCTCCGAGATCAAACTGGCAAGAAATCAGTCTTCTTGCGGAATTACGCTCTCTTTC TTGCTGGGGAGAAGCGTAAAGAAGAAGAATCGATAGAACTAGCGGAGACCTTGGGTAATAGCGATGCCACTAACTGTCACTTGGGTGCTATCGAGAGAGA TTTAGCGAACCTACGCAAGAATGGTGCTATTGATCCATTTGGATTGTACTTGTATGGCCTAGTGCTCAAGGAGAAAGGTAACCAGAATCTTGCTCGTACC GTTCTTGTTGATTCTGTGAACAACTATCCTTGGAACTGGAGTGCCTGGTCAGAGCTACAGGCCCTGTGTCCAACTACCGAGACCTTGAAAAGTCTCGGTC TCAGTAACCACTGGATGAAGGACTTCTTCCTGGCCAGTGCTTACCAAGAACTCAGAATGCACAGCGAGTCCTTGGCCAAATATGAAAGTCTACTGGGCAT ATTTAGTAATAGCAATTATATACAGGCTCAAATTGCGCAAGTGCAGTACAGTTTAAGGGAATTCGACCAAGTCGAGGTAATATTTGAAGAATTGTTGAGA AACGACCCCTATAGAGTCGAAGACATGGATATGTACTCCAATGTGCTCTATGCAAAGGAGTGCTTTTCAGCACTAAGTTCCCTTGCTCACAGGGTATTCA CAACGGATAAATATCGGCCTGAATCTTGTTGTATCATTGCCAACTACTACAGTTTAAAGGGGCAGCATGAGAAATCAGTCACCTACTTCAAAAGGGCTCT CAAGTTGAATAAAAACTATCTATCTGCTTGGACACTCATGGGGCATGAGTATGTTGAAATGAAGAACACGCCTGCTGCAGTTGATGCCTATAGAAGGGCT GTGGACATAAATCCTCGAGACTATCGTGCTTGGTACGGTCTAGGGCAAGCATACGAGGTGATGGGACTGCCTTTCTATGCGCTTCACTACTTCAAGAAGT CCATCTTTTTGCAACCCAGTGATGCTCGACTGTGGATTGCCATGGCTCACTGTTACGAGACTGATCAGCTCCAAATGGTGGAGGATGCAATCAAGTGCTA TCAAAGAGCTGTGAGCTGTGACGATAAGGAAGCAATTGCCCTGCGTCAGTTGGCAAAGCTGCATAAAGAGCTCGGCCTGTTTGAAGAGGCGGCATTTTAT TATAAAAAGGACTTGGAGAGGATGGAAGACGAGGAAAGAGAAGCGCAGAATATGGTCGAAGCTTTGTCGTTCCTTGCCCAGTATTGTAAAGATCAGAAGA GATACGAAGAAGCTGAGGTGTATTGTGCTCGTCTGATGGATTACGGTGGCCCTGAGAAAGAAACAGCAAAGAACATACTGCGAGGATTAAGGGGTGACTC CACTTTCCCGTCGATGGATGTCGAACATTTCCGACCTTGA
AA sequence Show only first row Show all	>Lus10042152 pacid=23153810 polypeptide=Lus10042152 locus=Lus10042152.g ID=Lus10042152.BGIv1.0 annot-version=v1.0 MKSNENCRNELRTAIPHLSDRCLHSAAKWAAEQLIGIEQDPAKFTPANTRFQRGSSSIRRRFRTNEFTSTPSTPIAGVSYVSTPVMEEDETVDNDFYLLG KSYFDCREYRRAAHALRDQTGKKSVFLRNYALFLAGEKRKEEESIELAETLGNSDATNCHLGAIERDLANLRKNGAIDPFGLYLYGLVLKEKGNQNLART VLVDSVNNYPWNWSAWSELQALCPTTETLKSLGLSNHWMKDFFLASAYQELRMHSESLAKYESLLGIFSNSNYIQAQIAQVQYSLREFDQVEVIFEELLR NDPYRVEDMDMYSNVLYAKECFSALSSLAHRVFTTDKYRPESCCIIANYYSLKGQHEKSVTYFKRALKLNKNYLSAWTLMGHEYVEMKNTPAAVDAYRRA VDINPRDYRAWYGLGQAYEVMGLPFYALHYFKKSIFLQPSDARLWIAMAHCYETDQLQMVEDAIKCYQRAVSCDDKEAIALRQLAKLHKELGLFEEAAFY YKKDLERMEDEEREAQNMVEALSFLAQYCKDQKRYEEAEVYCARLMDYGGPEKETAKNILRGLRGDSTFPSMDVEHFRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10042152 [exp]	0	1
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	2.4	0.9220
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	5.5	0.8987
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	5.7	0.9176
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	9.9	0.9034
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	12.4	0.9186
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10032163 [exp]	16.3	0.9074
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	17.9	0.9147
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	20.8	0.9062
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	24.1	0.8443
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	25.4	0.9145

Compare expression of checked genes

Lus10042152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.